Gene detail information of Glyur000604s00024558 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003555110.1 | 5.85E-07 | PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Glycine max] |
| trEMBL | tr|I1N6N9|I1N6N9_SOYBN | 2.00E-07 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G06080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00604 | 16000 | 18910 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.470 |
| SRR1783600 | control | 4.339 |
| SRR1783602 | moderate drought stress | 2.883 |
| SRR1811619 | moderate drought stress | 2.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.177 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.124 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.452 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.862 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.760 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.352 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.265 |
| SRR2868004 | Drought Stress (root) | 1.546 |
| SRR2967015 | Control (root) | 1.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.077 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 1.419 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.719 |
| SRR8749028 | MeJA induced 9h | 3.131 |
| SRR8749029 | MeJA induced 9h | 2.632 |
| SRR8749030 | Uninduced | 0.641 |
| SRR8749031 | Uninduced | 0.409 |
| SRR8749032 | Uninduced | 0.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.118 |
| SRR8400027 | Control - Root | 1.452 |