Gene detail

Gene detail information of Glyur000603s00029236.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69310.2	1.00E-22	WRKY DNA-binding protein 57
NR	XP_007157586.1	2.59E-86	hypothetical protein PHAVU_002G081600g [Phaseolus vulgaris]
Swissprot	tr\|Q9C983\|WRK57_ARATH	3.00E-31	Probable WRKY transcription factor 57
trEMBL	tr\|V7CJV1\|V7CJV1_PHAVU	1.00E-86	Uncharacterized protein {ECO:0000313\|EMBL:ESW29580.1}

Sequence

Transcript Sequence

>Glyur000603s00029236.1
ACTGTGTGTATTAACGAGACAACGCTTTCAAACGCTTCATAAGCTTGAAAAACTACGCGTCCCTTCCTCCTCACAACCAACAACACCCAAAACAAAAACCCTAACTCTTTCTCTCTTCGCGTTTTCCCAGAAAATCCATCACTTTCCCGGGAATCAGCTCCAGTTTCGAATCTCGCTGGTCTTCCTATTGCATAATTCGCGCGGGAACTCCATGTATGGAAGACAAACACAGAGCAGCTCACGATCCCGCAACCGCCGGTGAGTTCGCCGGCGAGTCTAGCTGGACGCTCAACGCCGATTATTCCGACGCCGCTTATTACTTCTCCGGCGANAGGGAGAGAAGCATGTTCGGCGACTTCGGCTGGAACCACGTACCGGACCGGATCGCTGCCACCGATGAAGGATTGTGGCCGTCGATGACCGGTTCGATCGAACCACCGGCGACGGCGGCGGCATCGTCGTACAGGTCGAATAACCAATCGGTTTCCTCCAGCTCCAGCGAGGATCCGCCGGAGAAGTCTACCGTCTCCGATGAGAAACCGCCTGAGATACCGAGCTACTATCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGGGTAGAACGCTCATCNGAGGACCCAACAATTGTGATAACTACATATGAAGGCCGACACTGTCATCACACCGTTGGATTTCCTCGAGGGGGAATCATTAGTCATGAAGCTACTGCCTTTACCACTGGCCAATTGGCTCCTACATCAATGTCACAGTTCTATTATCCTATAATTCAGTCACCCAGATCAGACATCAACACTTGTAGTAGCAATATTATCTCTCAACCTTGCCAAGCAGCACAGGATGAAGCTGGAAGATCATCCAGAAGCACTACAACGCCAGCTTCTGATGCACCGCCGCCACAGCCAGCTCCCACGGATGAAGGACTTCTTGGAGATATTGTGCCCCTGGGAATGCGCAACAGATGAGAGCAATATTTTATGTTATCGGCGCCGCGTTTGATGGGCTCAAAATCCTTGTCATAAAGATTTGATTCAACTGATGATCANGTAAATTAAGGTGGAGCTCAGAAAATGCAATGACATGCATGCAAGTTAGGCTTAAAAGGAAGCAATTTTTATTTTTGTTTTAGCAGCAAGTCTTTTTCACCTATCTTATACTCTGTCTCGAGAAGCGAGTCTAGTATATGCAAGAAGCAGGTAATTAATTAACTCTCACCGGTTGCTCCTATTTTTACCTTGAGCTCTGATATATCATATACTCCCTTGAATGTATATGTATACAGTTTACACTATTATTATATATCAGTGATAACCACCATGTATAATGTATATTAATTAATGAAGCTCTATTCCCCCTTGAAATTAACAAACCACTGTTTTTTATGTCCATTAATTGATGCTGATCTACGTGNAAATTGTTATACTTTGAGACACTTCATATATTAATAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00603	84748	103754	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000603s00029236.1	PF03106.10	WRKY	113	150	2.70E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.999
SRR1783600	control	20.691
SRR1783602	moderate drought stress	25.859
SRR1811619	moderate drought stress	25.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.045
DRR006520	Root Summer glycyrrhizin high producing strain	22.788
DRR006521	Root Winter glycyrrhizin high producing strain	21.401
DRR006522	Root Winter glycyrrhizin high producing strain	20.857
DRR006523	Root Summer glycyrrhizin low producing strain	51.669
DRR006524	Root Summer glycyrrhizin low producing strain	51.652
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.802

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.497
SRR2868004	Drought Stress (root)	9.064
SRR2967015	Control (root)	13.395

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.591
SRR9715740	Leaf	1.580
SRR9715741	Leaf	4.114
SRR9715739	Root	15.023
SRR9715742	Root	19.318
SRR9715743	Root	17.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.858
SRR8749028	MeJA induced 9h	24.071
SRR8749029	MeJA induced 9h	30.899
SRR8749030	Uninduced	43.604
SRR8749031	Uninduced	36.189
SRR8749032	Uninduced	34.732

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.721
SRR8400027	Control - Root	17.802