Gene detail

Gene detail information of Glyur000603s00029230

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61240.1	1.00E-159	Leucine-rich repeat (LRR) family protein
NR	AFK44024.1	0	unknown [Lotus japonicus]
COG	YP_004775215.1	4.00E-37	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	9.00E-41	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|I3SUT2\|I3SUT2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK44024.1}

Sequence

Transcript Sequence

>Glyur000603s00029230.1
TGAAAATAGCATAAAATAAAACTTCAGTGCCGACTAGTGGGTAGATTTCCAATTTCCAACTTGATGCCGCGTTCGCTGATTCTCCACTCGGATTATTAATCAAACTTCTACTACTCTCTCCCTTTCTCACTCAAATCCCAAATTTGCAAAATCTGAATCACACAGTTCAGATAAAAAAAAATAAAAATCAACAACAGCACTTTCAGATCTACCAGGACCCTTTTGCAGTCTCACCACAACACAAAAGGAAACAATATCGGTTCTTCTGTAGAGTGACGAGGATTTCGTGAAGCGCCCTCAAAATGGCGCGGATTCCCTTCACTTCACTTTCCCTCACCCTCGTTTTCGCTCTCTCAATTCTCAACCTTGCGCACTGCAAGACCCTCAAGCGTGACGTTAAGGCTTTGAACGAGATCAAGGCTTCTCTTGGTTGGAGAGTGGTGTATGCGTGGGTTGGAGATGACCCTTGTGGAGATGCAGATCTTCCTCCTTGGTCTGGTGTCACTTGTTCCACTGTCGGTGATTATCGTGTTGTCACCGAGCTTGAGGTGTATGCGGTGTCGATTGTGGGGCCTTTTCCTACTGCTGTGACCAGCTTGTTGGATCTTACACGGCTGGATCTCCATAATAACAAGTTGACAGGGCCTATTCCTCCTCAAATTGGACGGTTGAAGCGTCTTAAAGTATTAAATTTGAGATGGAACAAACTACAGGATGCAATTCCTCCAGAAATTGGGGAGCTTAAAAGTTTGACACATCTCTACCTAAGCTTCAATAATTTCAAGGGTGAAATTCCCAAGGAGCTAGCTAATCTTCCAGACCTTCGCTACCTTCATCTCCANGAAAACCGTTTGACTGGAAGAATACCACCAGAATTGGGCACACTACAAAATCTTAGGCACTTGGATGTTGGTAACAATCATTTGGTGGGTACCATAAGGGAACTCATTCGTATTGAAGGTTGCTTTCCAGCNCTACGCAATCTATATCTGAACAATAATTATTTTACTGGAGGAATACCTGCACAACTTGCTAACTTNTCCAGTCTCGAAATCTTGTACCTGTCCTACAACAAAATGTCAGGAGTTATACCATCTAGCCTTGCTCATATTCCTAAATTGACATACTTGTACTTGGATCACAATCAGTTTTCAGGGAGAATTCCTGAACCCTTTTACAAGCATCCATTTTTGAAAGAAATGTACATTGAGGGAAATGCATTCCGGCCTGGTGTCAACCCCATTGGTTTTCATAAAGTGCTTGAAGTTTCTGATGCTGATTTCCTTGTTTAATGAATCTCAAAGTATTTAATTTATTTTTCATAAAGTCTACGTGTATAATTATTGAAACACTAGTTCATCTGATTATCTCAATGAAATAGCCAAGATAGGGAATTCAATTTTTGCCAAAGCTTTCTTGCCATCATATCAATAAACAATAGTTTTTCAGGTTTACAATTTGAGCTTTCCACGTATCTAAGAAGTTTATTGTACAATAGAGATAGTTATGGACTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00603	35541	39583	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000603s00029230.1	PF13855.1	LRR_8	102	160	9.40E-09
Glyur000603s00029230.1	PF12799.2	LRR_4	174	208	8.10E-08
Glyur000603s00029230.1	PF13855.1	LRR_8	223	282	2.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.782
SRR1783600	control	43.328
SRR1783602	moderate drought stress	21.433
SRR1811619	moderate drought stress	21.097

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.201
DRR006520	Root Summer glycyrrhizin high producing strain	36.817
DRR006521	Root Winter glycyrrhizin high producing strain	26.003
DRR006522	Root Winter glycyrrhizin high producing strain	25.908
DRR006523	Root Summer glycyrrhizin low producing strain	56.509
DRR006524	Root Summer glycyrrhizin low producing strain	55.857
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.688

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.065
SRR2868004	Drought Stress (root)	38.836
SRR2967015	Control (root)	36.886

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.945
SRR9715740	Leaf	53.637
SRR9715741	Leaf	53.957
SRR9715739	Root	14.715
SRR9715742	Root	29.332
SRR9715743	Root	22.154

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	162.248
SRR8749028	MeJA induced 9h	94.062
SRR8749029	MeJA induced 9h	97.195
SRR8749030	Uninduced	72.811
SRR8749031	Uninduced	29.780
SRR8749032	Uninduced	22.743

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.914
SRR8400027	Control - Root	53.709