Gene detail

Gene detail information of Glyur000602s00018913

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G18480.1	CCAAT-displacement protein alternatively spliced product
NR	XP_003630836.1	Protein CASP [Medicago truncatula]
Swissprot	tr\|Q9LS42\|CASP_ARATH	Protein CASP
trEMBL	tr\|G7L912\|G7L912_MEDTR	CASP carboxy-terminal protein {ECO:0000313\|EMBL:AET05312.1}

Sequence

Transcript Sequence

>Glyur000602s00018913.1
ATGGCTGAATCGCTTTTATGCAATTTTGACTTAGAGAAGGAGAAATCTATATTGGATGAACAAGGGCTTCAAATTGCAGAAAACCAAGAAAACAGTCAGAAAAATAGGCGGAAACTTGCAGAGAGCACTAGAGATTTCAAGAAAGCTTCGCCTGAGGATAAGTTAAGCTTGTTTAATACCTTGCTTAAGGGGTACCAGGAAGAGGTTGATAATCTTACAAAGAGAGCAAAATTTGGAGAAAATGCTTTCCTTAACATCTATCAAAAGCTGTATGAAGCCCCAGATCCTTATCCAGCTCTTGCATCAATTGCAGAGCAAGATATCAAGTTGTCTGAGCTGGAATCCGAGAACCGAAAAATGAAACAACGCAATCTGGCAGAAGAGAACCAGAAAACATTAGAAATTTTAAAAGAAAGGGAACAATTACTGCAGGACCAGCTGCAGAATGCTAAAGAAAGTGTTTCCAATATGCAGAAATTACATGAACTTGCACAAAACCAGTTGTTTGAACTCCGTGCTCAATCTGAAGAAGAGAGGGCAGCTAAGCAAACAGAGGTCAATCTGCTGATGGATGAAGTTGAACGAGCACAAACAATGCTTCTTGGTTTGGAGAGAGAGAAGGGGGTTCTCCGATCTCAGCTCCAAACAGCAAATGGTGATGCTGAAACTAAGAAGAGTGATAATTTAGACTCAAATAGTGCACTTGAGAATGCTTTAATTGCCAAAGAGAAGTTAATCTCTGAATCGAACATGGAGCTACACAATATTGAAACAACCTTATCAAGTGAACACGAAGAACACATGAATGACATGAAGAAATTTACTGCAATGCTCAATGAAAAGGAGGCTTCTCTTAAGGCAGTGAAGAAAGAGCTTCAGGCAAGGCCAACAGAGAAAATGATTGATGATTTGCGTAAGAAAGTAAAGATTTTGCAGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGCAGTGGCTACAAGTGGGGAGGNGATGAGCAAGATGGAATCTCTTCTTCTTGATAAGAACCGGAAAATGGAACATGAGCTAACACAGTTGAAGGTCAAACTTTCTGAAAAAACATCTTCACTCCAAACAGCAGAACAGAAGGTANCGGAACTTGCAGCTAAGGTTAATGAACAACAAAAACTGATACAGAAGTTGGAAGATGATATATTGAAGGGTTATGGTTCCAACTCCAAAGATCATAAAGGAACTTTCCTTGATGACTGGGATCTATCAGAGACTAGTCGGAATGATGTGTCTGAGCATCAGAATATGGATCAAAGGCACACCTTAGATCAAGAAGATCAGAGCTCAATGCTTAAAGTAATCTGTAATCAGAGAGATCGATTTAGGACACGCTTACGAGAGACAGAAGAGGAAATAAGGCAGTTGAAGGAGAAGATTGGGGTATTAACAGTGGAACTGGAAAAGACCAAAGCAGATAATGTCAAACTATATGGGAAGATTCGTTATGTCCAAGATTACAATATTGAGAAAGTGGTTTCTAGGGGTTCCAAAAAGTATGCAGAAGATCTTGAAAGTGGTTTCACATCAGATGTTGAGTCTAAATACAAGAAGATATATGAGGATGATATAAATCCTTTTGCGGCATTCTCAAAAAAGGAAAGGGATCAAAGATGCAAGGAGTTGGGATTCAGGGACAGAATCACACTCAGCAGTGGACGATTTCTTCTCGGTAACAAGTATGCCCGAACTTTTGCATTTTTTTATACCATCGGGTTGCATATCTTGGTCTTTACCTGTCTCTATCGAATGTCAGCTTTGAGTTATCTTNGTCATGGTCCAGAGGAATTTCTGATTGGAGAGAGAAACATTGATCTTCCGCGTGGACCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00602	106048	114811	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006891 intra-Golgi vesicle-mediated transport

cellular_component
GO:0030173 integral component of Golgi membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000602s00018913.1	PF08172.7	CASP_C	365	601	1.60E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.918
SRR1783600	control	0.906
SRR1783602	moderate drought stress	0.777
SRR1811619	moderate drought stress	0.745

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.798
DRR006520	Root Summer glycyrrhizin high producing strain	0.815
DRR006521	Root Winter glycyrrhizin high producing strain	1.244
DRR006522	Root Winter glycyrrhizin high producing strain	1.134
DRR006523	Root Summer glycyrrhizin low producing strain	0.346
DRR006524	Root Summer glycyrrhizin low producing strain	0.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.750
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.609
SRR2868004	Drought Stress (root)	3.915
SRR2967015	Control (root)	3.957

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.336
SRR9715740	Leaf	1.343
SRR9715741	Leaf	2.827
SRR9715739	Root	0.238
SRR9715742	Root	0.273
SRR9715743	Root	0.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.642
SRR8749028	MeJA induced 9h	6.924
SRR8749029	MeJA induced 9h	3.980
SRR8749030	Uninduced	3.831
SRR8749031	Uninduced	2.378
SRR8749032	Uninduced	1.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.193
SRR8400027	Control - Root	8.544