Gene detail

Gene detail information of Glyur000602s00018909

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18500.3	1.00E-126	DNAse I-like superfamily protein
NR	KHN21555.1	0	Carbon catabolite repressor protein 4 like 3 [Glycine soja]
Swissprot	tr\|Q9LS39\|CCR4C_ARATH	2.00E-154	Carbon catabolite repressor protein 4 homolog 3
trEMBL	tr\|I1K5T1\|I1K5T1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G35240.1}

Sequence

Transcript Sequence

>Glyur000602s00018909.1
AAAGGGGAAGAAACGGTTGGGATTAAAAGGAGAGAAAGGGCATTGGGATTAGATATCAGGAAATTGTGGCGCTAAAGTAAACTTGAGGGCGTTTCCTTGTTCATTGGAAGGAAGCAAAGCAACACAAATGGCCTGCAACAATTGCTCTTCCGCTTCAACGGGTTGGTCTTGGCTTATAGCCTCCTCCTCTTCCACCAACGCCACGCGCTTCCCATTCCCAACCACTGCTTCACACATTCAGTGGCGCTCCAATTCTTACACCCCAAGAATTCACTCTCACGAAATGCAACGCCATTGGGTTGAAGCACTTGATCAATCACTCGCCTCTCCAGAGAGATTCACCGTGGCGTCATATAACATACTTGGCGATAGAAATGCTTCTCAACACAGTGATCTATACGTAAACATTCCTCCTCGTTACATGAAATGGGATCGTCGTAAGAGGGTTATTTGTGACGAACTCTTTGGATTGGACCCTGATATTATCTGTTTACAAGAGGTGGACAAGTATTTTGAACTCTCAGACGTTTTGGTTAAAGCAGGATACGCAGGATCTTTTAAGAGACGCACTGGAGACTCAGTTGACGGTTGTGCAATGTTTTGGAAAGCTGATAAGTTCCGGTTATTAGATGGAGAGAGCNTTCAATATAAGGACTTTGGCCTTCGTGATAATGTTGCTCAACTTCTAGTTTTTGAGATGTGTGAATCTGATTCAAGAAGACTGTTAGTTGGTAACATCCACGTACTGTATAACCCAAACAGGGGAGAAGTTAAATTAGGCCAAATTCGTTTTCTCTCATCAAGAGCACAGNCCCTCTCAGAGAAATGGGGTAATACCCCTGTTATCCTAGCTGGTGATTTTAATAGTACTCCTCAGAGTGGAATATACAAGTTTTTGTCATCATCTGAGCTAAATATCANGTTATATGACAGAAAGGAGTTATCTGGACAAAAACGCTGTCGTCCTGCTCAAGTTTTAGACGAGAAAAAGGAAACAGCTGGTCCATTTATCTTACTGGATGAATTGTTAAATTGCTGGACAGATGAAGAGGTAGAAATTGCAACTGGTGATTCTGAGTGTCACTTGGCCGTGCATCCATTAAAGCTGAATAGTTCATATGCCACAGTCAATGGTTCAACTACTACACGGGGATTCAATGATGAACCCTTGGCAACTTCCTATCACTCAAAGTTTCTTGGTACTGTAGATTACTTATGGTACTCAGACGGTATTGTACCTACAAGAGTTCTTGATACTGTTCCAATTAGCGATCTTTTGAGAGCAGGTGGTCTCCCATGCAAGAAAGTGGGAAGCGACCATTTGGCCTTGGTTTCTGAATTTTCCTTCTCAGTTGCCCATGATAAATCTACAGACACAGTTGCAGCGGCAGCAGCACCTAGAGTAGATACTGAAGACTAAGAGCATGATAATCTGCAGTCTTAAGAAAACAGCTCACGTTGTGTTAGGAAACAAGTTTTTGCTTTCCATATTTACTTATGCTGTTTCGATGATTTGCTGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00602	89843	95385	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000602s00018909.1	PF03372.18	Exo_endo_phos	74	398	8.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.989
SRR1783600	control	1.055
SRR1783602	moderate drought stress	1.813
SRR1811619	moderate drought stress	1.873

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.010
DRR006520	Root Summer glycyrrhizin high producing strain	0.941
DRR006521	Root Winter glycyrrhizin high producing strain	0.365
DRR006522	Root Winter glycyrrhizin high producing strain	0.351
DRR006523	Root Summer glycyrrhizin low producing strain	0.630
DRR006524	Root Summer glycyrrhizin low producing strain	0.722
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.453

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.623
SRR2868004	Drought Stress (root)	1.310
SRR2967015	Control (root)	1.509

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.768
SRR9715740	Leaf	28.881
SRR9715741	Leaf	17.402
SRR9715739	Root	0.240
SRR9715742	Root	0.337
SRR9715743	Root	0.483

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.034
SRR8749028	MeJA induced 9h	0.071
SRR8749029	MeJA induced 9h	0.162
SRR8749030	Uninduced	0.052
SRR8749031	Uninduced	0.184
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.674
SRR8400027	Control - Root	3.931