Gene detail

Gene detail information of Glyur000602s00018906

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73920.1	0	alpha/beta-Hydrolases superfamily protein
NR	XP_004503422.1	0	PREDICTED: uncharacterized protein LOC101491052 [Cicer arietinum]
Swissprot	tr\|Q67ZU1\|LIP2_ARATH	2.00E-14	Triacylglycerol lipase 2 (Precursor)
trEMBL	tr\|G7L902\|G7L902_MEDTR	0	Alpha/beta hydrolase family protein {ECO:0000313\|EMBL:AET05302.1}

Sequence

Transcript Sequence

>Glyur000602s00018906.1
ATGCAACGTTTTGTTGACAACGTCCTCGCTGTCACTAAAGAGTCGGTGAAGACCTTTACTTATGAGTCCTTGAACAATATTGTGAAGCTGATCAATGGATTATCAGCTCTTTTGTTGACATTACTACCTGGGAAAGCTAATATACTTGAAGGGATTCAGGGTTGGGAGCTCAGGCCAACTTTCCGTGGACCACGATTTCCACGTTGGATGGAAAATGGNGTGTCCTCTTTCAACGAATTTATTCATGAACTTGCTGTGGATTCTGATGTTTCAAGTCTGGAATACTCATCTGGAGAAGAAGATGANGATGCGTATGAATATCCTGAATCTCCCTCATCTGAGAGTTCTAGAGCCTCTAGAGNCAGTTTTACTGATTATGGTAGGCATCAGATGGATTGGATCCAGTGTATCTTACTTTGGATTTTGGTTCCTGTNAAGTTTTTGTTGGGGATTCCATTTGGTCTTTTCCAGTTAGTTTATTCTGGAGTGTCAAAACCGCTGTCTATCTCTGGAAATGAGCACTNTTCACAATCACATTCATATGCGAGGATGCAAAGCATCAAGGACCAAATTATCCATCGTACAACTGATAGAAGACGTGGGGTCGTAGAGGACCTTCATTTAGGCATGGAAATATTTATAGAAGCTGCATTTGATATTGTTCACAAAGGCCTACATCTTCTTCTTTCCCCATCAGAAGCTTTTGGAACATTATTTAGGTTGGTTTCATCACATGGAAGAGGTGTTGAAGATGATAATAATGGTGTNGAGAATGCCTCCATTTCTACAACTACACATGGAGAGAATGACCCAACACCTACGGAGAGGAATACCAGTTTTTGTCAGTCTCTGAACACGGATGCCCGGACATGTCAGGATGTCATAACAGAGCTTGGGTATCCATACGAAGCTATTCATGTGATCACTTCTGATGGATATGTTCTTCTTTTGGAAAGAATACCCAGACCTAAGTTGTGCATCATTTCTGTCAAATATAGCACTATGGGATCAGAACTTGTAACTATCATGTGTATAGGTGGAGGGTTTCTGTANAGGCGAGATGCTCAAAAAGCTGTTTATCTTCAGCATGGAGTTTTCGATTCATCAATGGGTTGGGTATCTAATGGTGTTGTNGGGTCTCCAGCTTTTGCAGCCTATGATCAAGGGTATGATGTGTTTCTGGGAAATTTACGTGGTTTGATTTCTAGGGAACACATCAATAAGAACATCTCCTCACGCCAATACTGGCAGTACTCCATCAACGAACATGGGACTGAGGATATTCCTGCTTTGATAGAGAAAATCCATCAAGTAAAAACTGCTGAGTTGAGGCTTAGTAAACCTGATATCGAGGAGGATAGTAATGAAAATCAGCTTTACAAGCTTTGTGCAATTTGTCATAGTCTGGGAGGAGCATCTATGTTGATGTATGTCATTACGCGTAGGATACAAGAGAAGCCCCATAGACTTTCTAGATTGATTTTGTTATCACCTGCTGGTTTTCATCATAACTCTAACATAGTTTTTTCTGCGGTGGAGCATGTGTTATTTTTTCTGGCTCCTATTTTGTCTCGAATTTTCCCAGCCTTCTATATACCAACCAGATTTTTCCGCATGCTTGTTAACAAGTTAGCTAGGGACCTGCAAAACCTACCTGCAGTTGGAGGGTTGGTTCAAACTTTGATGGGTTATGTTCTTGGTGGGGACAGCTCAAATTGGGTTGGGGTTTTAGGAATACCACATTACAACATGAATGACATGCCAGGTGTGTCTTTCTATGTTGCTCTCCATCTTGCACAGCTAAAGAGAACTGGAAGATTTAGAATGTTTGATTANGGGAGTGCATCAGCTAACATGGAGGTGTATGGTTCACGTGAGCCTTTGGACTTGGGTGAACACTACGGGCTCATAGACATTCCTGTTGATCTGGTTGCTGGTCAGAAAGACACAGTGATACGGCCTTCAATGGTAAAGAGACACTATAAATTGATGAAGGATGCTGGTGTGNATGTGTCAATGAATGAGTTTGAATATGCTCATTTGGACTTTACCTTCTCCCACCGTGAAGAACTTTTGTCATATGTTATGTCACGTTTGCTGCTGGTGGAAACCAATCCAAAGCATCAAGTAAGTCAAAGGGCTGTAAGATCAAGGAAGAAAGGACATGTTTCAGCTAGAGGGTAGAATGTGAGAAAATCTGTACATAGTGCAAGTTTTTCGGCCATGGCTGGTAAATCATTGTTCGATGGAGCTGTACAACTGTCTGACTTNAGAGCTGCTCTATACAAGTGTCGTCTCTTCCTTCAAATCTTATCTTTTTCTTATTTTATTTTTCCGCTTGGAGGAAAGACAAGACCTTGGAAAACAATATGATGGAATACATTGTAAAATAGTGTTAGGTACTATGTGAATGGAACAAAAGGAATCAGAGAATCTTTGCGTTGGTCGTCCACTAGAGATTTGTAATACCAGTTAGGATAAGTAAAAGGGGGGGAGTTACACTAATCCTAAAGGATTAGTTAGGATAGTTAGTCAGAGGAGGGCAATTAGAGAAATAGGGGAAAGTAGTAGAAATGATTCATGCAAAGAATTTAGAAATTTTTGGAGGAGAAATATCGCTAGTTTTTTCAATCATTCGATAGAATTGTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00602	78629	83619	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000602s00018906.1	PF04083.11	Abhydro_lipase	292	376	4.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.635
SRR1783600	control	0.633
SRR1783602	moderate drought stress	0.541
SRR1811619	moderate drought stress	0.526

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.890
DRR006520	Root Summer glycyrrhizin high producing strain	0.894
DRR006521	Root Winter glycyrrhizin high producing strain	4.053
DRR006522	Root Winter glycyrrhizin high producing strain	3.897
DRR006523	Root Summer glycyrrhizin low producing strain	1.036
DRR006524	Root Summer glycyrrhizin low producing strain	1.223
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.206
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.243

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.389
SRR2868004	Drought Stress (root)	1.323
SRR2967015	Control (root)	1.452

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.303
SRR9715740	Leaf	1.324
SRR9715741	Leaf	0.884
SRR9715739	Root	0.546
SRR9715742	Root	1.130
SRR9715743	Root	1.328

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.905
SRR8749028	MeJA induced 9h	3.024
SRR8749029	MeJA induced 9h	1.402
SRR8749030	Uninduced	1.062
SRR8749031	Uninduced	0.783
SRR8749032	Uninduced	0.663

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.130
SRR8400027	Control - Root	2.714