Gene detail

Gene detail information of Glyur000602s00018902

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24440.1	1.00E-147	Fibronectin type III domain-containing protein
NR	XP_004503425.1	0	PREDICTED: protein VERNALIZATION INSENSITIVE 3-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LHF5\|VIL1_ARATH	1.00E-175	VIN3-like protein 1
trEMBL	tr\|K7KRM1\|K7KRM1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G35280.4}

Sequence

Transcript Sequence

>Glyur000602s00018902.1
GGAGAGTACTATATGGATTGGGGAGGAATAGCTAGCTGAGTAGCGGTAACAGTGGAACTGCAGAAAACCTCAAAACCCTGCTTGCTTTAAGACTAGTCCTCCTCCTACTCTTACACGCGCTCCTCCGCGCGTGTCCTTCTCCATGTTCTCCCCGTCCTAAAACGTGAGCAACTCGTACAAGTTCCTCTCTCTCTCTCTCTCTCTCTCTGTCGAACAAACTACAACTAACAACAACGAAGAAGTCTCTTTGTGCTTGGATTCATTCATTCATGCTCCTTCGGAGCAAATCTCATGCTCCGAAGAAAAAGCCCTTGCTTCTTCCTCCATTCTCTCAAGTTTCTGGTGTTCAAAGCCTTTCTTCTAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTCCTTCAGGAGTTCGTGAAATGTGGGCCAAAGAAGGAGGAACTTCTTCGAACATGCTTTGATAAGGACAAAAAGAACGTTTCATCAAAAAGCAGGATGACTGAAGCTAAGTCAACTGGTAAGATAATTAAGAAACAAGACACAAAGAAGGTTTCTANTGTCAGTCATCAGCCCTCGAGGAAGCAACATCGGAAGGGTGAAAACCCCACCCGACTAATACCACCTCCTGACCAGGCTTCTGATTTCGGACATTCAAACACTTGGATCTGTAAAAATGCCGCTTGTAGGGCAGTTCTATCAATGGTTGACACATTTTGTAGACGGTGCTCTTGCTGCATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACGTCTGAATCTACTCAAGAGGANTCTTGTGGGCTGTCTTGCCATATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTATTGATCACGGACAACTGATGCAACTAGATGGTGGTTATTGCTGTGCATCCTGTGGTAAAGTTACAGGGATACTTGGATGCTGGAAGAAACAGCTAAATATAGCAAAAGATGCCCGGCGTGTAGATGTACTCTGTCATAGGATTTATTTGAGCTACAGGCTCCTGGATGGAACTTCGAAATTTAAAGACTTGCATCAAATTGTACTGGAAGCAAAGGCTAAACTGGAGACAGAAGTTGGCCCTGTTAATGGGGTTTCTTCCAAGATGGCAAGAGGCATTGTCAGCAGACTTGCTATTGCCGGTGATGTGCAGAGACTCTGCTCTCTTGCTATTGAGAAAGCTGATAGCTGGTTGGCCACTGGTCCCAATGTAAATCCAGATTCCAGAGAGGGTTCACTACCTGCTGCTTGCAAATTTGTTTTTGAAGAAGTAACAGCTTCCTCAGTCAAAATCATATTAATTGAAATGTCAAATATATGTTCTGAGGACATTAAGGGGTACAAGCTCTGGTATTACAAGAGTCGGGATGAACCACACACAAAAGATCCTGTTTCAGTGTTTCCCAGATCTCAGAGGAGGATTTTGATATCCAACCTTCAACCTTGCACAGAATATACTTTCCGGATTATATCTTACACTGACAAGGGTGACCTGGGTCATTCCGAAGCTAAGTGTTTCACCAAGAGCATCGAGATAATTCAAAACAATCCCTCTTCATCTGTTGCTATGAATCATAAAAAAGATAACCCTCAAACTGGGGGCAATTCTTCTGGCTCCAAGATGGAGCTCAATGCCACAACGACAAACTCTGGATTCATGGTTCGAGACCTTGGTAAAATTTTGNGTTTCGCTTGGGCTCAAGAACAAGGTTACTCTGAGTTTTGCTGTGCTGATATGAAAAATTGCTGTGGGCAAAGTGAAATGAGCAAGCCTAAAATTCCAGAAGCACAGTTGCCTTCAGATTCACGAGGCCTTGATTTAAATGTTGTTTCAGTCCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTCTTCAAGGGATGAAGGTAATGGTTGCACTTTGCTGCAGGCGGTTGAGGCAGACGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGTGACTCCCAAACCTGGGCCCGTGGGCCAACAGGAGAAGTGTCAGCTGTTGATTCTCGGGTAAAGGTGGGCAGGAAAAGGATAGCGAGCGCAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGTTCTCCGTTACGTGTATCAGAGGGCTCACGCTCCTTGGATGAGAACTTTGAGTATTGTGTCAAAATAATTCGTTGGCTAGAATGTGAGGGTCACATCAAAAAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCAACAGAGCAGGAACGCAGGGTGGTAAATACCTTCATTCAAACTCTTAGCGATGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCGGATATTATATCCAGCAAGAGGCCAAGAAATGGATTCAGTAGTATTGGAGATCTTAAGGCAGCTAGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00602	55447	64137	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000602s00018902.1	PF00041.16	fn3	346	426	5.00E-06
Glyur000602s00018902.2	PF00041.16	fn3	346	426	4.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.116
SRR1783600	control	4.188
SRR1783602	moderate drought stress	3.600
SRR1811619	moderate drought stress	3.615

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.975
DRR006520	Root Summer glycyrrhizin high producing strain	5.789
DRR006521	Root Winter glycyrrhizin high producing strain	10.377
DRR006522	Root Winter glycyrrhizin high producing strain	10.198
DRR006523	Root Summer glycyrrhizin low producing strain	8.618
DRR006524	Root Summer glycyrrhizin low producing strain	8.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.852
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.583
SRR2868004	Drought Stress (root)	14.446
SRR2967015	Control (root)	13.792

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.216
SRR9715740	Leaf	12.453
SRR9715741	Leaf	14.409
SRR9715739	Root	3.556
SRR9715742	Root	7.984
SRR9715743	Root	7.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.100
SRR8749028	MeJA induced 9h	20.385
SRR8749029	MeJA induced 9h	12.769
SRR8749030	Uninduced	31.116
SRR8749031	Uninduced	33.052
SRR8749032	Uninduced	18.863

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.775
SRR8400027	Control - Root	11.146