Gene detail information of Glyur000602s00018897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13350.2 | 1.00E-116 | NSP (nuclear shuttle protein)-interacting GTPase |
| NR | XP_004512853.1 | 0 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FL69|AGD5_ARATH | 1.00E-14 | Probable ADP-ribosylation factor GTPase-activating protein AGD5 |
| trEMBL | tr|G7L8Z4|G7L8Z4_MEDTR | 0 | ARF GTPase activator {ECO:0000313|EMBL:AET05294.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00602 | 23049 | 30674 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000602s00018897.1 | PF01412.13 | ArfGap | 37 | 148 | 3.40E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.926 |
| SRR1783600 | control | 38.523 |
| SRR1783602 | moderate drought stress | 33.927 |
| SRR1811619 | moderate drought stress | 33.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.693 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.818 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.580 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.435 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.058 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.019 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.078 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.700 |
| SRR2868004 | Drought Stress (root) | 29.268 |
| SRR2967015 | Control (root) | 25.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.697 |
| SRR9715740 | Leaf | 14.617 |
| SRR9715741 | Leaf | 41.680 |
| SRR9715739 | Root | 11.842 |
| SRR9715742 | Root | 22.322 |
| SRR9715743 | Root | 20.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.371 |
| SRR8749028 | MeJA induced 9h | 69.136 |
| SRR8749029 | MeJA induced 9h | 69.013 |
| SRR8749030 | Uninduced | 59.766 |
| SRR8749031 | Uninduced | 144.154 |
| SRR8749032 | Uninduced | 68.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.427 |
| SRR8400027 | Control - Root | 29.990 |