Gene detail information of Glyur000602s00018895 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13345.1 | 2.00E-105 | Serinc-domain containing serine and sphingolipid biosynthesis protein |
| NR | XP_010088854.1 | 2.14E-172 | putative serine incorporator [Morus notabilis] |
| trEMBL | tr|W9QGK4|W9QGK4_9ROSA | 8.00E-173 | Putative serine incorporator {ECO:0000313|EMBL:EXB37051.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00602 | 15822 | 20832 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000602s00018895.1 | PF03348.10 | Serinc | 60 | 223 | 4.20E-18 |
| Glyur000602s00018895.1 | PF03348.10 | Serinc | 236 | 309 | 1.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.264 |
| SRR1783600 | control | 4.416 |
| SRR1783602 | moderate drought stress | 1.889 |
| SRR1811619 | moderate drought stress | 1.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.707 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.436 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.070 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.071 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.465 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.047 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.138 |
| SRR2868004 | Drought Stress (root) | 7.068 |
| SRR2967015 | Control (root) | 8.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.271 |
| SRR9715740 | Leaf | 0.468 |
| SRR9715741 | Leaf | 0.473 |
| SRR9715739 | Root | 2.975 |
| SRR9715742 | Root | 3.122 |
| SRR9715743 | Root | 3.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.938 |
| SRR8749028 | MeJA induced 9h | 3.030 |
| SRR8749029 | MeJA induced 9h | 3.753 |
| SRR8749030 | Uninduced | 0.630 |
| SRR8749031 | Uninduced | 0.457 |
| SRR8749032 | Uninduced | 0.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.352 |
| SRR8400027 | Control - Root | 14.841 |