Gene detail

Gene detail information of Glyur000601s00025467

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	6.00E-113	senescence-related gene 1
NR	XP_003517890.1	0	PREDICTED: protein SRG1-like isoform X1 [Glycine max]
COG	YP_001341292.1	6.00E-33	2OG-Fe(II) oxygenase [Marinomonas sp. MWYL1]
Swissprot	tr\|Q39224\|SRG1_ARATH	3.00E-139	Protein SRG1
trEMBL	tr\|I1J677\|I1J677_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G09360.1}

Sequence

Transcript Sequence

>Glyur000601s00025467.1
TTATGGATTCCCAAACTAAAAAGCTTGGAACCTCTCTCCTTGTGCCTTCTGTCCACGAGCTAGCTAAGCAGNCCCTAGCTGAAGTTCCAGAACGATATGTTCGTCNAAACCAAGATCCTACGCTTGTGCCTAACACAATCTCTTTACCACAAGTGCCAGNCATTGATTTGAATAAATTGTTGTTTGAAGATGGAACTGAGCTTGAGATGCTAGACCATGCATGCAAAGAATGGGGTTTCTTCCAGCTGATAAATCATGGAGTCAACCCTTCATTGGTGGAAAATGTAAAGACAGGTGTACAAGAGTTCTTCAGTCTTCCAATGGAAGAGAAGAAGAAATTTTGGCAAAAACCAGGAGAATTAGAGGGGTATGGTCAAAATTTTGTTGTGTCTGAGGAACAAAAGCTAGAATGGGCAGATCTATTCTACATTATCACTCTTCCTTCATACACAAGGAATCACCATCTATTTTCTAGTATTCCAAAATCATTCAGAAACGATTTAGAGAGCTATTGTTTAGAAATGGAAAAACTTTGCATTACTATCATTGAACATATGGCAAAAGCTCTTAAGATCAAACCTAATGAATTACTAGAATTATTTGAAGATGTGAGTCAGTCCATGAGGATGAATTGCTACCCTCCATGTCCCCAACCAGAACATGTCATGGGTCTTAATCCTCATTCTGATGCTGGTGCTCTTACCATCTTACTACAAGCTAATGAAATTGAAGGGCTCCAAATAAGGAAAGATGGAATGTGGATTCCTATTAAACCCCTCTCTAATGCTTTTGTCATCAATGTTGGAGATATTTTAGAGATATTGACTAATGGCATTTACCGGAGCATCGAACACCGGGCAACAATCAACTTGGGGCAGGAACGAATTTCCATTGCCACATTTCATAGGCCTCAAATGCACAGAGTTGTAGGGCCAATGTCAACCCTTATTACTTCTGAAAGACCATCATTATATAAAAGAATTGGTGTAGCGGATTACTTCAAAGGATACTTTTCACGAGAGCTGCAAGGGAAATCATACATTGATGTTGTTAGAATCCANAAAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00601	131975	136209	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000601s00025467.1	PF14226.1	DIOX_N	51	147	3.60E-26
Glyur000601s00025467.1	PF03171.15	2OG-FeII_Oxy	205	303	1.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.733
SRR1783600	control	21.204
SRR1783602	moderate drought stress	17.233
SRR1811619	moderate drought stress	17.292

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.375
DRR006520	Root Summer glycyrrhizin high producing strain	0.710
DRR006521	Root Winter glycyrrhizin high producing strain	0.346
DRR006522	Root Winter glycyrrhizin high producing strain	0.203
DRR006523	Root Summer glycyrrhizin low producing strain	0.622
DRR006524	Root Summer glycyrrhizin low producing strain	0.721
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.547

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.869
SRR2868004	Drought Stress (root)	24.665
SRR2967015	Control (root)	11.954

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.029
SRR9715741	Leaf	0.030
SRR9715739	Root	4.330
SRR9715742	Root	11.470
SRR9715743	Root	10.550

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.039
SRR8749028	MeJA induced 9h	3.511
SRR8749029	MeJA induced 9h	5.212
SRR8749030	Uninduced	4.132
SRR8749031	Uninduced	2.705
SRR8749032	Uninduced	2.364

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.048
SRR8400027	Control - Root	45.224