Gene detail information of Glyur000601s00025456 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49740.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004513641.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g49740-like [Cicer arietinum] |
| Swissprot | tr|Q9M2Y4|PP276_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g49740 |
| trEMBL | tr|K7LIB2|K7LIB2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G12335.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00601 | 53493 | 55661 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000601s00025456.1 | PF01535.15 | PPR | 103 | 127 | 0.034 |
| Glyur000601s00025456.1 | PF13041.1 | PPR_2 | 134 | 180 | 2.20E-07 |
| Glyur000601s00025456.1 | PF01535.15 | PPR | 207 | 229 | 0.21 |
| Glyur000601s00025456.1 | PF01535.15 | PPR | 239 | 265 | 7.00E-06 |
| Glyur000601s00025456.1 | PF01535.15 | PPR | 344 | 374 | 0.035 |
| Glyur000601s00025456.1 | PF01535.15 | PPR | 412 | 435 | 0.0035 |
| Glyur000601s00025456.1 | PF13041.1 | PPR_2 | 541 | 589 | 6.90E-12 |
| Glyur000601s00025456.1 | PF01535.15 | PPR | 683 | 710 | 0.56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.293 |
| SRR1783600 | control | 1.228 |
| SRR1783602 | moderate drought stress | 1.730 |
| SRR1811619 | moderate drought stress | 1.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.098 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.712 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.576 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.167 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.205 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.096 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.801 |
| SRR2868004 | Drought Stress (root) | 1.162 |
| SRR2967015 | Control (root) | 1.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.461 |
| SRR9715740 | Leaf | 1.273 |
| SRR9715741 | Leaf | 0.785 |
| SRR9715739 | Root | 4.815 |
| SRR9715742 | Root | 3.736 |
| SRR9715743 | Root | 3.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.806 |
| SRR8749028 | MeJA induced 9h | 0.937 |
| SRR8749029 | MeJA induced 9h | 0.512 |
| SRR8749030 | Uninduced | 0.260 |
| SRR8749031 | Uninduced | 0.106 |
| SRR8749032 | Uninduced | 0.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.114 |
| SRR8400027 | Control - Root | 2.043 |