Gene detail

Gene detail information of Glyur000601s00025454

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12170.1	1.00E-93	Chaperone DnaJ-domain superfamily protein
NR	XP_003519062.1	2.91E-177	PREDICTED: chaperone protein dnaJ 6-like [Glycine max]
COG	YP_002607163.1	5.00E-17	chaperone protein DnaJ [Nautilia profundicola AmH]
Swissprot	tr\|Q9FL54\|DNAJ6_ARATH	1.00E-119	Chaperone protein dnaJ 6
trEMBL	tr\|I1JG59\|I1JG59_SOYBN	1.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G31080.1}

Sequence

Transcript Sequence

>Glyur000601s00025454.1
GTAAAAAATAAAACCACCGGCGAAGCAAAGTAATNCTATTGAGTCGGAAGAAGGAAATGGGTAAGAAGAAGAGAGGTAGGGTTTCGGATGATGAGGAAATCGAATCTGATACTAACCGTTGCAATGACAACGATAACTCCCTCTACCAGGTTCTTGGTGTGGAGAGAACGGCGTCTCAACAGGAAATCAAGAAGGCATATTACAAGTTGGCATTGAGGCTGCACCCTGATAAGAACCCTGGTGATGAGGAAGCTAAGGCCAAGTTTCAGCAATTGCAAAACGTTATCTCCATTCTCGGGGATGAAGAAAAACGGGCTCTCTATGATCAGACTGGTTGCGTTGATCATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAATACTTCAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCCGACTCTGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAATATGAACAGGTTGTTTTGTTCAATGCTTTGTTCGGATCCTAAACTTGACTCCCACCGATTCAAAGATATTCTTGATGAGGCTATAGCTGCGGGTGAACTAAAGGAAAAAAAAGCCTATAAGAAATGGGCGAAGAAAATATCAGAAACTAAGCCACCAACTANTCCTTTAAGGAGGGCAAAATCAAATAAGCAATCAGAAACGGATTTGTATGCTATCATATCACAACGACGGAATGAGAGGAAAGATCTGTTTGATTCTATGTTCTCCTCTCTAGTTTCCAAATATGGTGGAGGTCAAATGCCAGAACCCTCTGAAGAGGAATTTGAAGCTGCACAGAGAAAGCTGGAAAGCCGAAGGTCCTCAAAAATGCCAAAAAGAAAGTAGCCAACTTACGATTTTGTGTATAGTTTGTTTGTTTCCCTTATGATGTGCAATCACTTCACCCATTTTTAGTGGGAATTCTTATCTGTTCTTTTATTGCTGAACTCCGGGGTAGTTATTTTCATGTGTCAGTTAATGTAACTGGTTACTACAAGGCTGCAATAAAATAGATCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00601	49280	51751	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000601s00025454.1	PF00226.26	DnaJ	29	90	4.00E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.670
SRR1783600	control	7.649
SRR1783602	moderate drought stress	5.972
SRR1811619	moderate drought stress	6.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.630
DRR006520	Root Summer glycyrrhizin high producing strain	7.554
DRR006521	Root Winter glycyrrhizin high producing strain	4.297
DRR006522	Root Winter glycyrrhizin high producing strain	4.109
DRR006523	Root Summer glycyrrhizin low producing strain	9.911
DRR006524	Root Summer glycyrrhizin low producing strain	9.930
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.926
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.850

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.284
SRR2868004	Drought Stress (root)	10.863
SRR2967015	Control (root)	10.886

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.940
SRR9715740	Leaf	3.888
SRR9715741	Leaf	5.244
SRR9715739	Root	0.782
SRR9715742	Root	5.241
SRR9715743	Root	2.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.021
SRR8749028	MeJA induced 9h	11.684
SRR8749029	MeJA induced 9h	11.457
SRR8749030	Uninduced	2.135
SRR8749031	Uninduced	2.759
SRR8749032	Uninduced	2.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.224
SRR8400027	Control - Root	16.188