Gene detail information of Glyur000601s00025450 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57680.1 | 0 | Peptidase S41 family protein |
| NR | XP_004513645.1 | 0 | PREDICTED: carboxyl-terminal-processing protease-like [Cicer arietinum] |
| COG | YP_007133199.1 | 6.00E-101 | carboxyl-terminal protease [Stanieria cyanosphaera PCC 7437] |
| Swissprot | tr|F4J3G5|CTPA3_ARATH | 0 | Carboxyl-terminal-processing peptidase 3, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VHP1|A0A072VHP1_MEDTR | 0 | Carboxy-terminal processing peptidase-like protein {ECO:0000313|EMBL:KEH41544.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00601 | 30287 | 35997 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000601s00025450.1 | PF13180.1 | PDZ_2 | 200 | 272 | 3.90E-10 |
| Glyur000601s00025450.1 | PF03572.13 | Peptidase_S41 | 303 | 465 | 5.00E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.220 |
| SRR1783600 | control | 1.193 |
| SRR1783602 | moderate drought stress | 0.518 |
| SRR1811619 | moderate drought stress | 0.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.193 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.119 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.178 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.149 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 80.514 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 79.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.841 |
| SRR2868004 | Drought Stress (root) | 1.206 |
| SRR2967015 | Control (root) | 1.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.081 |
| SRR9715740 | Leaf | 80.547 |
| SRR9715741 | Leaf | 80.712 |
| SRR9715739 | Root | 0.190 |
| SRR9715742 | Root | 0.474 |
| SRR9715743 | Root | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.110 |
| SRR8749028 | MeJA induced 9h | 0.054 |
| SRR8749029 | MeJA induced 9h | 0.196 |
| SRR8749030 | Uninduced | 0.034 |
| SRR8749031 | Uninduced | 0.104 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.260 |
| SRR8400027 | Control - Root | 1.561 |