Gene detail information of Glyur000601s00025449.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64660.1 | 4.00E-51 | CYS, MET, PRO, and GLY protein 2 |
| NR | XP_004502912.1 | 3.60E-111 | PREDICTED: U-box domain-containing protein 27-like [Cicer arietinum] |
| COG | YP_001958455.1 | 5.00E-06 | hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9FLF4|PUB27_ARATH | 8.00E-60 | U-box domain-containing protein 27 |
| trEMBL | tr|G7JAZ3|G7JAZ3_MEDTR | 1.00E-103 | Plant U-box protein {ECO:0000313|EMBL:AES72815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00601 | 12669 | 13439 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000601s00025449.1 | PF04564.10 | U-box | 12 | 80 | 3.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.790 |
| SRR1783600 | control | 0.732 |
| SRR1783602 | moderate drought stress | 2.855 |
| SRR1811619 | moderate drought stress | 3.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.392 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.332 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.977 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.458 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.668 |
| SRR2868004 | Drought Stress (root) | 0.906 |
| SRR2967015 | Control (root) | 1.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.608 |
| SRR9715740 | Leaf | 1.382 |
| SRR9715741 | Leaf | 3.610 |
| SRR9715739 | Root | 0.015 |
| SRR9715742 | Root | 0.939 |
| SRR9715743 | Root | 0.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.046 |
| SRR8749028 | MeJA induced 9h | 0.044 |
| SRR8749029 | MeJA induced 9h | 0.040 |
| SRR8749030 | Uninduced | 0.118 |
| SRR8749031 | Uninduced | 0.208 |
| SRR8749032 | Uninduced | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.068 |
| SRR8400027 | Control - Root | 2.080 |