Gene detail information of Glyur000600s00022492 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56590.1 | 6.00E-81 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_004493317.1 | 0 | PREDICTED: uncharacterized protein LOC101500310 [Cicer arietinum] |
| trEMBL | tr|G7L4U1|G7L4U1_MEDTR | 0 | Zinc finger (C3HC4-type RING finger) family protein, putative {ECO:0000313|EMBL:AES81105.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00600 | 105599 | 110015 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.416 |
| SRR1783600 | control | 38.370 |
| SRR1783602 | moderate drought stress | 29.272 |
| SRR1811619 | moderate drought stress | 29.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.965 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.422 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.499 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.428 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.438 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.042 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.909 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.386 |
| SRR2868004 | Drought Stress (root) | 14.810 |
| SRR2967015 | Control (root) | 13.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.959 |
| SRR9715740 | Leaf | 4.239 |
| SRR9715741 | Leaf | 3.179 |
| SRR9715739 | Root | 9.805 |
| SRR9715742 | Root | 22.098 |
| SRR9715743 | Root | 18.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.299 |
| SRR8749028 | MeJA induced 9h | 9.422 |
| SRR8749029 | MeJA induced 9h | 5.892 |
| SRR8749030 | Uninduced | 1.561 |
| SRR8749031 | Uninduced | 0.419 |
| SRR8749032 | Uninduced | 0.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.577 |
| SRR8400027 | Control - Root | 22.605 |