Gene detail information of Glyur000599s00030425 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14160.1 | 3.00E-35 | 2-oxoglutarate-dependent dioxygenase family protein |
| NR | XP_002323656.1 | 3.58E-43 | hypothetical protein POPTR_0016s13980g [Populus trichocarpa] |
| COG | YP_003648469.1 | 5.00E-15 | 2OG-Fe(II) oxygenase [Tsukamurella paurometabola DSM 20162] |
| Swissprot | tr|P32811|PHSH_SOLTU | 5.00E-07 | Alpha-glucan phosphorylase, H isozyme |
| trEMBL | tr|B9IGP3|B9IGP3_POPTR | 1.00E-43 | Uncharacterized protein {ECO:0000313|EMBL:EEF05417.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00599 | 86667 | 88147 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000599s00030425.1 | PF13532.1 | 2OG-FeII_Oxy_2 | 32 | 119 | 6.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 73.776 |
| SRR1783600 | control | 72.182 |
| SRR1783602 | moderate drought stress | 54.483 |
| SRR1811619 | moderate drought stress | 52.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 63.385 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 61.563 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.852 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.900 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.859 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.626 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.469 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 75.639 |
| SRR2868004 | Drought Stress (root) | 69.299 |
| SRR2967015 | Control (root) | 68.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 60.938 |
| SRR9715740 | Leaf | 40.822 |
| SRR9715741 | Leaf | 55.210 |
| SRR9715739 | Root | 41.761 |
| SRR9715742 | Root | 61.408 |
| SRR9715743 | Root | 61.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.855 |
| SRR8749028 | MeJA induced 9h | 27.912 |
| SRR8749029 | MeJA induced 9h | 33.399 |
| SRR8749030 | Uninduced | 16.036 |
| SRR8749031 | Uninduced | 18.735 |
| SRR8749032 | Uninduced | 18.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 82.642 |
| SRR8400027 | Control - Root | 75.521 |