Gene detail information of Glyur000598s00025096 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23930.1 | 2.00E-38 | probable small nuclear ribonucleoprotein G |
| NR | XP_003625846.1 | 9.43E-49 | hypothetical protein MTR_7g104930 [Medicago truncatula] |
| COG | YP_023499.1 | 5.00E-08 | snRNP Sm-like protein [Picrophilus torridus DSM 9790] |
| Swissprot | tr|O82221|RUXG_ARATH | 3.00E-49 | Probable small nuclear ribonucleoprotein G |
| trEMBL | tr|Q2HTF4|Q2HTF4_MEDTR | 4.00E-49 | Small nuclear ribonucleoprotein {ECO:0000313|EMBL:AES82064.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00598 | 94883 | 96547 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000598s00025096.1 | PF01423.17 | LSM | 9 | 71 | 4.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.617 |
| SRR1783600 | control | 55.015 |
| SRR1783602 | moderate drought stress | 83.490 |
| SRR1811619 | moderate drought stress | 82.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 165.670 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 163.888 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 175.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 169.524 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 148.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 145.369 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 93.140 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 91.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 207.442 |
| SRR2868004 | Drought Stress (root) | 159.584 |
| SRR2967015 | Control (root) | 177.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 94.317 |
| SRR9715740 | Leaf | 107.941 |
| SRR9715741 | Leaf | 86.085 |
| SRR9715739 | Root | 89.888 |
| SRR9715742 | Root | 67.576 |
| SRR9715743 | Root | 71.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 414.032 |
| SRR8749028 | MeJA induced 9h | 118.407 |
| SRR8749029 | MeJA induced 9h | 296.121 |
| SRR8749030 | Uninduced | 100.561 |
| SRR8749031 | Uninduced | 93.876 |
| SRR8749032 | Uninduced | 110.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 201.203 |
| SRR8400027 | Control - Root | 182.340 |