Gene detail

Gene detail information of Glyur000598s00025093.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25220.2	1.00E-54	Protein kinase superfamily protein
NR	KEH39620.1	8.18E-101	receptor-like kinase [Medicago truncatula]
COG	YP_004222960.1	3.00E-15	serine/threonine protein kinase [Microbacterium testaceum StLB037]
Swissprot	tr\|Q0V7T5\|Y1864_ARATH	8.00E-73	Probable receptor-like protein kinase At1g80640 (Precursor)
trEMBL	tr\|A0A072VN94\|A0A072VN94_MEDTR	3.00E-101	Receptor-like kinase {ECO:0000313\|EMBL:KEH39620.1}

Sequence

Transcript Sequence

>Glyur000598s00025093.1
TTGGTTCCGTGTCCAGAAACCAAATTTTCGTGTCCAGAATGACCAACCGCATAAGCTACTCTCAGTAGCTTTTGAGCAGACGTACGGTGGCGGTGGACAGGCCACTAATCCAAACGCATGCTATATCCAATGTCTATGACCAATCTCTCACGGTGAACGACGTATACAAGTCTCCTACCTTAGACCCTACCCTCTTACACTCATGAATCAAATGGATTAAAAAGTGCTTTCTCGGTTTCTTTGAAAGAGCCTTTGTCCATTTCCGCGGGGAGGATCATTGCCAAAAACCGATTCAAAATTGAACCAAGAACGAAAAGAAGCTTCTCTAGACAAGTTATTCCAATCACACTCACANTCACACTCACATATATATACAAATACACATACTCCCTCTCTGTCTCATTCTCCTTGATTGANTTAAGGACCCCCAAAATGAATCTTCTTGTTCTGTTCATGCCCATTTGGGTGTTGAGCATTTCTCTTTCCTCACCAATTCTTCATGCTGCACCCTCCATTTCTGTTTCTCANTCTTCTGCAAATGCCCAAGCTGAATCCCCAGGGATTCAGGAGGTTAGAATAGTGCACCACCAGAATCTGAATAAGAGAATTCTAGTAGCACTAATCGCATGTTCTGTTCTTCTTTGTGGAATCTTTCTATTCTTATTATATATCTGCTTCCGTCGACATAAAAGCTTGAGAAGCTCCAGTAGTAAAAGCCAAGGAGCCGTTGAGGCAGCAAAAGGNGAAACCTTAAGTTCTGTTAATGCCAAAATTAACTACTCAAGAATGGCAGATAAGAAGAGCTCGGTTGCTATTTTCGACTTTCAGTTGTTAGAGGCTGCAACCAACAGCTTTTCCACAAGCAATATCATGGGAGAGAGTGGTAATTCTAGAGTTGTTTATAGAGCTCGTTTTGATGAACATTTCATGGCAGCTGTGAAGAAAGCAGAAAGTGATGCTGATAGAGAATTTGAGCACTCCAATCCTCTTGTGGTTCATAGANACCTAAAATCTTCTAATGTTCTTCTGGATTCTAACTTTAATGCTAAGCTATCAGATTTTGGACATGCTGTAGCAGCTTCTGGTGTGCAACACAAGAACATGAACATGTCGGGTACTTTGGGATACGTGGCACCCGAGTACATATCACATGGTAAACTAACGGATAAGAGTGATGTCTATGCTTTTGGGNTTGTCCTTCTAGAACTTCTAACTGGAAGAAAACCCATGGAGAACATGTCCTCACACCAATATCAATCTCTGTTAACTGACAGATCAAAGCTTCCAAGTATTCTAGATCCTGTTATCAAAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTGCTATGTGTGCAAGCAGAACCAAGTTATAGGCCACTTATAGCAGATGTCCTGCACTCTCTCATCCCTTTGGTGCCAGTGGAGCTTGGAGGGTCACTCAGAGTTACAGAACCAATCCGCTCTGAGAACTCTCACTGATTTTGGTTTTTCCACTGTGGTATTTCATTTGTGCACTTTCCTTTTTCCTATAACTATTTATTATTTCGCCAACGAGGGTTGGAATAGATGGTCGGACTCTCCATTCACANTAGCTGTGATTTTGATTCGAATCTTGAATACCCTNTTGGTAGGCTATATGTAAATTCCATCCTGGCCTTGTACGGGGGTGTACATCCCCTATTCTAAATTTATTATTTCAAAGAGGAATATCTAGTGCTCACCATCCTTTTGTGCCTTGTATGTAATTAACTAATTATGCATGATTTTGAACTTTTTTTTTAGTTGGAATTCATGGTAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00598	69051	73578	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000598s00025093.1	PF00069.20	Pkinase	182	327	1.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.747
SRR1783600	control	2.773
SRR1783602	moderate drought stress	1.364
SRR1811619	moderate drought stress	1.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.011
DRR006520	Root Summer glycyrrhizin high producing strain	2.966
DRR006521	Root Winter glycyrrhizin high producing strain	4.813
DRR006522	Root Winter glycyrrhizin high producing strain	4.781
DRR006523	Root Summer glycyrrhizin low producing strain	1.974
DRR006524	Root Summer glycyrrhizin low producing strain	1.693
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.818
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.832

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.945
SRR2868004	Drought Stress (root)	4.433
SRR2967015	Control (root)	4.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.248
SRR9715740	Leaf	2.176
SRR9715741	Leaf	1.505
SRR9715739	Root	0.833
SRR9715742	Root	2.062
SRR9715743	Root	1.948

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.362
SRR8749028	MeJA induced 9h	0.292
SRR8749029	MeJA induced 9h	0.212
SRR8749030	Uninduced	1.113
SRR8749031	Uninduced	0.491
SRR8749032	Uninduced	0.522

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.672
SRR8400027	Control - Root	10.802