Gene detail

Gene detail information of Glyur000598s00025089.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G80660.1	H(+)-ATPase 9
NR	XP_003543699.1	PREDICTED: ATPase 9, plasma membrane-type-like [Glycine max]
COG	YP_005270382.1	plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030]
Swissprot	tr\|Q42556\|PMA9_ARATH	ATPase 9, plasma membrane-type
trEMBL	tr\|I1M5Y0\|I1M5Y0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G44650.1}

Sequence

Transcript Sequence

>Glyur000598s00025089.1
ATGGGAGGCCTCGAAGACATTAAGAAGGAGGCAGAGCGAATACCCGTTGATGAAGTATTCCGAGAATTGAATTGTTCCAAGGAAGGTCTCACTAATGACGAAGGCCAGAAGAGGTTGCANGAAAGNAAGTTGCTCAAATTCTTGGGCTTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCCGCTGCTATCATGGCTATTGCATTGGCAAATGGAGGGGGTGAGCCACCGGATTGGCAGGATTTCGTGGGAATCATGGTGTTGCTAATCATCAACTCAACCATTAGTTTTATAGAAGAAAACAATGCAGGCAATGCTGCTGCAGCACTTATGGCAGGAGACATCATCCCAGCCGATGCTCGTCTTTTGGATGGAGATCCCCTTAAGATTGACCAATCAGCACTCACAGGTGAATCCTTGCCTGTTACAAAGAACCCTGGCGATGAAGTCTTCTCCGGGTCCACAGTGAAGCAAGGAGAGATTGAGGCTGTTGTAATNGCCACTGGGGTACACACCTTCTTCGGTAAGGCTGCTCATTTGGTGGACAGCACTAACCAAGTTGGCCATTTCCAAAAGGTGTTAACAGCCATTGGTAACTTCTGCATTTGCTCAATTGCTTTGGGCATGATCATCGAGATTGTTGTCATGTACCCGATTCAGCACCGCAAGTATAGGAGTGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCTATTGCCATGCCAACAGTTTTGTCGGTTACAATGGCTATTGGTTCCCATAGGCTGTCAGAGCAAGGTGCCATCACAAAGAGGATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTCTATGTAGTGACAAGACTGGCACTCTAACATTGAACAAACTCACTGTAGACAAGAGTTTGGTTGAGGTTTTTATAAAAGATGCCGACAAGGACACAGTAATTTTGATGGGAGCTAGGGCCTCTAGGGTAGAGAACCAAGATGCTATTGATGCNTGCATTGTTGGAATGTTGGGTGATCCAAAGGAGGCTAGAGAAGGCATTACAGAGGTGCATTTCCTGCCCTTTAATCCCGTGGACAAGCGTACTGCCATAACATATATAGACACCAGTGGTAATTGGCACCGAGTAAGCAAAGGGGCACCAGAGCAGATTATTGAACTTTGCAATCTCAGAGAAGATGTGAAGAAGAAAGCTCTTTCCATTATTGATAAATTTGCTGATCGTGGTCTCCGTTCCCTTGCTGTTGCCAAACAAGAAGTGCCAGAGAAGAGCAAGGAGAGTCCAGGAGGACCATGGCAGTTTGTGGGTCTGTTGCCTCTCTTTGACCCACCAAGGCATGACAGTGCAGAGACCATAAGGCGTGCTCTCAATCTTGGAGTGAACGTTAAGATGATTACCGGTGACCAGCTAGCTATTGGGAAGGAGACTGGTCGCAGGCTAGGCATGGGAAGTAACATGTACCCTTCATCCTCCCTCCTTGGTGAGCACAAGGATGAGAACATGGCTGCCCTTCCAGTTGATGAGCTTATTGAGAAAGCTGATGGCTTTGCTGGTGTCTTCCCTGAACATAAATATGAGATTGTGAAGAGGCTTCAGGATAGGAAACACATATGTGGGATGACNGGAGATGGTGTCAATGATGCTCCTGCATTGAAAAGAGCAGACATTGGGATTGCGGTGGCAGATGCAACAGATGCAGCTCGAGGTGCATCTGACATAGTCCTCACGGAGCCTGGTTTGAGTGTCATTGTGAGTGCAGTCTTGACAAGCCGAGCCATTTTCCAGAGGATGAAGAACTACACCATCTATGCTGTTTCTATAACAATCCGAATCGTGCTTGGCTTCATGCTCCTTGCTCTCATCTGGAAATTTGATTTCTCACCTTTCATGGTTCTCATCATTGCCATACTAAATGACGGCACAATCATGACCATTTCCAAGGACAGGGTGAAGCCATCTCCCATGCCAGATTCATGGAAGTTGAAAGAGATTTTTGCCACAGGCATAGTGCTTGGTGCCTACCTCGCTGTTATGACTGTTATCTTCTTCTGGGCTGCTTATGCATCCGATTTCTTCTCGGAAAAATTTGGAGTGAAATCTATCAGAGGTAGCCACAATGAGCTCACAGCAGCTATTTACCTTCAAGTGAGTATTGTGAGCCAGGCTCTCATCTTTGTTACAAGGTCAAGGAGCTGGTCTTTTCTTGAACGCCCTGGCCTCTTTCTTATGGTTGCCTTTCTAATAGCACAGTTGATTGCCACACTCATAGCTGTGTATGCAAATTGGGGCTTTGCAAAAATCAAAGGAATTGGATGGGGTTGGGCAGGTATTATTTGGCTCTACAGCATCGTTTTCTACTTCCCCTTGGATGTCCTTAAGTTCATCATACGATANGCATTGAGTGGCAAGGCATGGAATACTATTACTGAGAACAGGACTGCTTTCACCTCAAAGAAGGATTATGGAAAGGGAGAGAGGGAAGCACAATGGGCTGCAGCTCAACGCACACTACATGGGCTAAATCCTCCTGAAACAGACCATATGTTGAATGAAAATAACAACTATAGGGAATTGTCTGAACTTGCAGAACAGGCCAAGAAACGTGCTGAAATTGCAAGGTTAAGGGAGCTTCACACACTGAAGGGGCATGTTGAGTCTGTTGTGAAGCTCAAGGGACTTGACATTGAGACCATTCAGCAGCACTACACCGCTAGAGAAGGCATTACAGAGGTGCATTTCCTGCCCTTTAATCCCGTGGACAAGCGTACTGCCATAACATATATAGACACCAGTGGTAATTGGCACCGAGTAAGCAAAGGGGCACCAGAGCAGATTATTGAACTTTGCAATCTCAGAGAAGATGTGAAGAAGAAAGCTCTTTCCATTATTGATAAATTTGCTGATCGTGGTCTCCGTTCCCTTGCTGTTGCCAAACAATTTTGTGAGGAACTAGTATGCATACTTTTTCAGGAAGTGCCAGAGAAGAGCAAGGAGAGTCCAGGAGGACCATGGCAGTTTGTGGGTCTGTTGCCTCTCTTTGACCCACCAAGGCATGACAGTGCAGAGACCATAAGGCGTGCTCTCAATCTTGGAGTGAACGTTAAGATGATTACCGGTGACCAGCTAGCTATTGGGAAGGAGACTGGTCGCAGGCTAGGCATGGGAAGTAACATGTACCCTTCATCCTCCCTCCTTGGTGAGCACAAGGATGAGAACATGGCTGCCCTTCCAGTTGATGAGCTTATTGAGAAAGCTGATGGCTTTGCTGGTGTCTTCCCTGGAGGAAGACAAGACTTCACCTCACTCACTAATTGTTTTGAGTTGTTTTTGAATCATGTGAATTGTGAAAACCCAGAACATAAATATGAGATTGTGAAGAGGCTTCAGGATAGGAAACACATATGTGGGATGACNGGAGATGGTGTCAATGATGCTCCTGCATTGAAAAGAGCAGACATTGGGATTGCGGTGGCAGATGCAACAGATGCAGCTCGAGGTGCATCTGACATAGTCCTCACGGAGCCTGGTTTGAGTGTCATTGTGAGTGCAGTCTTGACAAGCCGAGCCATTTTCCAGAGGATGAAGAACTACACCATCTATGCTGTTTCTATAACAATCCGAATCGTGCTTGGCTTCATGCTCCTTGCTCTCATCTGGAAATTTGATTTCTCACCTTTCATGGTTCTCATCATTGCCATACTAAATGACGGCACAATCATGACCATTTCCAAGGACAGGGTGAAGCCATCTCCCATGCCAGATTCATGGAAGTTGAAAGAGATTTTTGCCACAGGCATAGTGCTTGGTGCCTACCTCGCTGTTATGACTGTTATCTTCTTCTGGGCTGCTTATGCATCCGATTTCTTCTCGGAAAAATTTGGAGTGAAATCTATCAGAGGTAGCCACAATGAGCTNACAGCAGCTATTTACCTTCAAGTGAGTATTGTGAGCCAGGCTCTCATCTTTGTTACAAGGTCAAGGAGCTGGTCTTTTCTTGAACGCCCTGGCCTCTTTCTTATGGTTGCCTTTCTAATAGCACAGTTGGTGAGTTTTTGTGAAAGAGAATATATAAATGAGTTTGGTTTGTTCAGTGTGTGA

Protein Sequence

>Glyur000598s00025089.1
MGGLEDIKKEAERIPVDEVFRELNCSKEGLTNDEGQKRLXEXKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGIMVLLIINSTISFIEENNAGNAAAALMAGDIIPADARLLDGDPLKIDQSALTGESLPVTKNPGDEVFSGSTVKQGEIEAVVXATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGMIIEIVVMYPIQHRKYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLVEVFIKDADKDTVILMGARASRVENQDAIDACIVGMLGDPKEAREGITEVHFLPFNPVDKRTAITYIDTSGNWHRVSKGAPEQIIELCNLREDVKKKALSIIDKFADRGLRSLAVAKQEVPEKSKESPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDENMAALPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGIVLGAYLAVMTVIFFWAAYASDFFSEKFGVKSIRGSHNELTAAIYLQVSIVSQALIFVTRSRSWSFLERPGLFLMVAFLIAQLIATLIAVYANWGFAKIKGIGWGWAGIIWLYSIVFYFPLDVLKFIIRXALSGKAWNTITENRTAFTSKKDYGKGEREAQWAAAQRTLHGLNPPETDHMLNENNNYRELSELAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIETIQQHYTAREGITEVHFLPFNPVDKRTAITYIDTSGNWHRVSKGAPEQIIELCNLREDVKKKALSIIDKFADRGLRSLAVAKQFCEELVCILFQEVPEKSKESPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDENMAALPVDELIEKADGFAGVFPGGRQDFTSLTNCFELFLNHVNCENPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGIVLGAYLAVMTVIFFWAAYASDFFSEKFGVKSIRGSHNELTAAIYLQVSIVSQALIFVTRSRSWSFLERPGLFLMVAFLIAQLVSFCEREYINEFGLFSV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00598	54698	62457	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01535	PMA1, PMA2	EC:3.6.3.6	Oxidative phosphorylation	map00190
			Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0006754 ATP biosynthetic process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0016887 ATPase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000598s00025089.1	PF00122.15	E1-E2_ATPase	111	273	2.20E-41
Glyur000598s00025089.1	PF00702.21	Hydrolase	277	554	1.30E-21
Glyur000598s00025089.1	PF00702.21	Hydrolase	1004	1151	4.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.206
SRR1783600	control	4.230
SRR1783602	moderate drought stress	2.209
SRR1811619	moderate drought stress	2.241

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.247
DRR006520	Root Summer glycyrrhizin high producing strain	2.069
DRR006521	Root Winter glycyrrhizin high producing strain	0.890
DRR006522	Root Winter glycyrrhizin high producing strain	0.838
DRR006523	Root Summer glycyrrhizin low producing strain	1.604
DRR006524	Root Summer glycyrrhizin low producing strain	1.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.211
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.211

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.922
SRR2868004	Drought Stress (root)	0.958
SRR2967015	Control (root)	1.209

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.102
SRR9715740	Leaf	0.159
SRR9715741	Leaf	0.039
SRR9715739	Root	0.644
SRR9715742	Root	2.017
SRR9715743	Root	1.834

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.099
SRR8749028	MeJA induced 9h	0.027
SRR8749029	MeJA induced 9h	0.025
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.694
SRR8400027	Control - Root	2.589