Gene detail

Gene detail information of Glyur000598s00025086

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15880.1	4.00E-95	golgi snare 11
NR	XP_004486621.1	2.51E-142	PREDICTED: Golgi SNAP receptor complex member 1-1-like [Cicer arietinum]
Swissprot	tr\|Q9LMP7\|GOS11_ARATH	1.00E-119	Golgi SNAP receptor complex member 1-1
trEMBL	tr\|A0A072VDE7\|A0A072VDE7_MEDTR	9.00E-138	Golgi SNAP receptor complex member 1 {ECO:0000256\|PIRNR:PIRNR027109}

Sequence

Transcript Sequence

>Glyur000598s00025086.1
TTTTCTAGGCAAATTATTCACAGCATAAATTTGTTCTCTCTTAACCTTTTGCAGGCAAGAAAACTCGAAGCTCAGTTGGATGAGCAAATGAATTCATATCGTAAATTGGTTTCAGCAAAAGTTTCTACNCAAGATGATGCAACAGAGAGTGATCTAGAGTCTTGGATTGAACGATTACTTAACCAACTCAAACAAGTAAACTCACAGATGCAAGCTTGGGTGTCCTCTGGTGGGTCAGAAATGGTTTCTCATACTCTGACTAGACACCAAGAAATTTTTCAAGATCTCACCCAGGAGTTTTATCGTCTCCGGTCTAGTCTTAGAGCTAAGCAAGAGCATGCTTCACTACTCGATGATTTTAAAGAGTTTGATCGGACAAGATTAGATTTGGAAGAGGATGCAGGTTCTGAACAGCAAACCCTCCTAAAAGAGTATGCATCTATAAGCCGAAGTACAGGACAGATGGACACTGTTATTTCACAAGCGCAAGCAACACTTGGTGCGCTAGTCTTCCAGCGTTCAACTTTTGGTGGGATCAATTCAAAGCTCAGCAATGTGAGCAGCCGCCTCCCAACGGTAAATAATATTCTATCAGCAATAAAGAGAAAAAAGTCGATGGATACCATTATACTTTCCCTTGTTGGCTCCATATGCATCTTTCTTATTTTCATCTACTGGCTAACCAAGTAAAGAAGATGTTTATTGTGATGGGGTGGCTTGGGTTTAATCTATTGTATACACCTTGTCTAGTTGTCTGTTGGCTTTTGTCGTTTATGCATGCAGCAGAACTCACATTTTTTTGTCTAATTGATGGTAAAGATGAAGGAAGTAACGCATTTTATTTTTGACATAAATGTGTAAATTGTGTATCTNTATGCGTTCCATTCCTTAGTTCGGATATCATCATAGCATAAGGAGAGGGTATAAGATGAAATAAACATCTTTTTGTCAACAAAAAAAAAAATGATTCGTGCTTGTTTGGTTTCAGTTGAGACCCACAAAACTTGAGTTTGGAATGTTCAAACTTGAGTTTGNCATGTTTGTGTCTCAATGGGTGGAAGTGTTTTTCGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00598	29863	32471	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006888 ER to Golgi vesicle-mediated transport

cellular_component

GO:0000139 Golgi membrane

GO:0005801 cis-Golgi network

GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000598s00025086.1	PF12352.3	V-SNARE_C	140	204	3.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.185
SRR1783600	control	15.146
SRR1783602	moderate drought stress	29.149
SRR1811619	moderate drought stress	29.134

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.586
DRR006520	Root Summer glycyrrhizin high producing strain	21.461
DRR006521	Root Winter glycyrrhizin high producing strain	81.710
DRR006522	Root Winter glycyrrhizin high producing strain	78.158
DRR006523	Root Summer glycyrrhizin low producing strain	27.157
DRR006524	Root Summer glycyrrhizin low producing strain	27.634
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.199
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.845

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.971
SRR2868004	Drought Stress (root)	22.757
SRR2967015	Control (root)	29.528

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.366
SRR9715740	Leaf	14.334
SRR9715741	Leaf	14.473
SRR9715739	Root	10.595
SRR9715742	Root	14.584
SRR9715743	Root	12.313

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.195
SRR8749028	MeJA induced 9h	22.337
SRR8749029	MeJA induced 9h	34.511
SRR8749030	Uninduced	23.676
SRR8749031	Uninduced	39.669
SRR8749032	Uninduced	40.070

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.643
SRR8400027	Control - Root	25.433