Gene detail

Gene detail information of Glyur000598s00025084

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80760.1	2.00E-100	NOD26-like intrinsic protein 6;1
NR	XP_004486614.1	1.23E-136	PREDICTED: aquaporin NIP6-1-like [Cicer arietinum]
COG	YP_005009762.1	1.00E-45	MIP family channel protein [Niastella koreensis GR20-10]
Swissprot	tr\|Q9SAI4\|NIP61_ARATH	3.00E-125	Aquaporin NIP6-1
trEMBL	tr\|Q6J1S8\|Q6J1S8_MEDTR	3.00E-135	Nodulin 26-like protein {ECO:0000313\|EMBL:AAT35231.1}

Sequence

Transcript Sequence

>Glyur000598s00025084.1
ATGGACTTCCATAATGAGCAAATTCCATCAATGTCGCCAGGCAGTACTCCAGGTATAGGAGCAGAGTTTATAGGGACGTTCATTCTGATGTTTGCTGGGACAGCGACTGCAATTGTGAACCAAAAGACACAAGGGTCAGAGACTCTGATTGGATGTGCCGGCTCTTCTGGCCTCGCCGTTATGATCGTCATCCTCTCCACCGGCCACATCTCCGGTGCTCATCTCAACCCCGCCGTCACCATTTCCTTTGCTGCATTGAAGCATTTCCCATGGAAGCATGTGCCTTCGTATATTAGTGCACAAGTATTGGCATCACTATGTTCCTCATTTGCTTTGAAGGAGGTTTTCCACCCTTTCATGAGTGGTGGAGTCACAGTTCCTTCTGGAGGGTATGGCCAGGCTTTTATTCTAGAGTTCATTATCAGCTTTAATCTCATGTTCGTTGTCACTGGAGTCGCCACCGACACAAGAGCTGTAGGAGAACTCGCGGGAATTGCTGTGGGAGCGACCGTGATGGTCAATATACTCATAGCAGGGCCAATGACAGGAGCCTCAATGAACCCAGTAAGAACTCTAGGTCCAGCGATTGCTGCAAACAACTACAAAGGCATATGGGTCTATCTGGTTGCTCCCATACTTGGAGCTCTAGTTGGGGCAGGTGCCTATACCACGGTCAAGCTGCCCGAAGAACATGATAACGCCGTCAAGGCAAAGCCTTCAATTCCCAGGAGCTTCAAAAGGTGACATTTGCTGTCCCCATGGTCATCATCAGCCATGGGATCAGACCACCTAAGAAAACAAGTTAGACACTATATGACAGGCTAATTGTGTTTTTGATNATATAAATAGGGTGGAAAGCAAGCAAAGAGAGAGAGAGCCGTTTGGTATGTATGCACATTTTAGATATGCAAAATATGAGTTAGGGTGTATGATGCCATCCATTAAATCCAAGCAAAAATGAATGCCGTTTCTGTTTTTTTTTTTTTGGTCGAAAAATGCCGTTTCTGTTTGGTACAAGCAAATACAGTGTTATTCTCTTCTTGTTCTTTTTCCCTTCTTCTTTCGCGATAAAAGTAAAAGAAAGAGAAAGAAAAAAAACCGATTAACACTTAGTCAGTACAGTAAATTCCTCTGAGATCATATCAGATAAAAGAACATTGGAAGTAAGCCATTACATTAGCAAGAGTGAAGAAACAGATAGACACATTTACANAAAGAGCCAGTGTTTTCTCTCTAGCCAAAAGGCAGTAGTAATCAAGGCACGAGACTGGTCATAACTATTGGATATAATGATTTTATATTAAAATGAATCTCTGTCACTTAAATATAAAATCATTATATCCAACGACTATGACCAGATCTATCATGGTGAGCGACCTATAGGGAAATGATAACATGTGAAAATAACTTAGGTATGAGATAATTGACACAACCGGGACTCAGATATATATACATACNTAAATTTTGAATGCACGCTCGTGAATATCTTGCAAGTATCTAATACAGAAAAAGAAAAGAAGAAGACATGGCTCTACATAAACGCAGAACTATGGTTGGTTGAGGTTGTGTTTGGGAGAGGGATTAAGGAATCCATCTGAGAGTTTTATTATTCCATACTCAACAAGAAAAACAGAGTGACTAAACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00598	19394	23999	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000598s00025084.1	PF00230.15	MIP	21	222	1.10E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.570
SRR1783600	control	22.241
SRR1783602	moderate drought stress	44.476
SRR1811619	moderate drought stress	44.053

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.117
DRR006520	Root Summer glycyrrhizin high producing strain	6.683
DRR006521	Root Winter glycyrrhizin high producing strain	6.878
DRR006522	Root Winter glycyrrhizin high producing strain	6.315
DRR006523	Root Summer glycyrrhizin low producing strain	6.151
DRR006524	Root Summer glycyrrhizin low producing strain	6.085
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.654

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.671
SRR2868004	Drought Stress (root)	10.332
SRR2967015	Control (root)	6.775

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.059
SRR9715740	Leaf	4.238
SRR9715741	Leaf	9.473
SRR9715739	Root	13.034
SRR9715742	Root	29.920
SRR9715743	Root	25.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.766
SRR8749028	MeJA induced 9h	2.540
SRR8749029	MeJA induced 9h	2.572
SRR8749030	Uninduced	1.534
SRR8749031	Uninduced	3.705
SRR8749032	Uninduced	4.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.012
SRR8400027	Control - Root	32.603