Gene detail

Gene detail information of Glyur000598s00025082

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32060.3	6.00E-36	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
NR	XP_007135811.1	9.12E-68	hypothetical protein PHAVU_010G160500g [Phaseolus vulgaris]
Swissprot	tr\|Q9XHS0\|RS12_HORVU	6.00E-52	40S ribosomal protein S12
trEMBL	tr\|V7AR71\|V7AR71_PHAVU	3.00E-68	40S ribosomal protein S12 {ECO:0000256\|RuleBase:RU000670}

Sequence

Transcript Sequence

>Glyur000598s00025082.1
CTCAAATTATTTTAAATTGAATTATATCTGATTTAAATTTAAAATTATAAGATGAAAAAAAAAAACTAAGTGTGGATGGGGGATATTCTCACATTAAAACCCTAGTATTTCAGTGATTTTCGGCCGCCGAGTTCCACCACTTCACTCTCTTTCTCTCAATCACTCTGTCGCACGCACTGTCACTGCAAATAAACATGTCAAGTGAAGAAGGGGCTGTTGCAGCTGAGCCAGCTGTTTCAATTCCAGGTGAGCCAATGGACATCATGACTGCNCTACAGCTTGTGCTGAAAAAGTCAATGGCTTATAATGGTCTTGCACGAGGTCTTCATCAAAGTGCGAAAGCGATTGAGAAGAATGCAGCACAGCTATGTATTCTAGCGGAAGATTGCGACCAAGCTGATTATGTCAAACTGGTGAAAGCCCTTTGTGCAGAGCACAATTTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTAGCTGCTCCTGTGTGGTTGTCAAGGACTTTGGGGAGGAACACGAAGCCTATAATGTTGTTCTGCAGCATGTCAAATCTAACTGAGTTGCAATATGCCTTAGATTTGTGGGTTCCAATTTGAAGTTTTTGTATGACTCATGACTTTTGCATTTATGGAGTATCTGCCTTGTGATTTTGATGGTTTATGACTTGATACAAAATTTCNTATTTTCATTGCTGCTGGTACTCAAGTTTGATCACATTCTCCGTTTCTCTGTTGTGTAAACTGGCCTGTTGATAGAATTGTTTATAACCTGAATCAAATTCTGAACTGGGGAGAACGATTGGTACACAATTTATGCTAGTTGTGAACGACTGAGCCATATATTGAATTTGAACCCACATTGTAACAAGTGCATTTGTAACAGTGCATGTAGCATTAGAGGGGTGGTGTTATAGTCTGGTTAGGATCATGTAAGCAAATATAGACAATNTGCCCAAACAATGAATTCAGCCCAATTTGCAATAGCTGAACTTGGGTTCTTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00598	12006	14332	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000598s00025082.1	PF01248.21	Ribosomal_L7Ae	26	88	1.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.655
SRR1783600	control	22.941
SRR1783602	moderate drought stress	22.031
SRR1811619	moderate drought stress	21.749

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	76.986
DRR006520	Root Summer glycyrrhizin high producing strain	76.434
DRR006521	Root Winter glycyrrhizin high producing strain	33.461
DRR006522	Root Winter glycyrrhizin high producing strain	32.093
DRR006523	Root Summer glycyrrhizin low producing strain	62.822
DRR006524	Root Summer glycyrrhizin low producing strain	62.108
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.470
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.498

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	120.340
SRR2868004	Drought Stress (root)	82.202
SRR2967015	Control (root)	86.511

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.291
SRR9715740	Leaf	42.733
SRR9715741	Leaf	35.332
SRR9715739	Root	76.132
SRR9715742	Root	47.865
SRR9715743	Root	51.718

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	183.269
SRR8749028	MeJA induced 9h	44.596
SRR8749029	MeJA induced 9h	141.206
SRR8749030	Uninduced	14.046
SRR8749031	Uninduced	11.704
SRR8749032	Uninduced	30.317

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.980
SRR8400027	Control - Root	84.541