Gene detail

Gene detail information of Glyur000597s00020333

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43030.1	4.00E-91	Ribosomal protein L3 family protein
NR	XP_003604074.1	7.55E-146	50S ribosomal protein L3 [Medicago truncatula]
COG	YP_007073420.1	2.00E-81	50S ribosomal protein L3 [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|Q9SKX4\|RK3A_ARATH	2.00E-129	50S ribosomal protein L3-1, chloroplastic (Precursor)
trEMBL	tr\|G7J8L6\|G7J8L6_MEDTR	3.00E-146	50S ribosomal protein L3P {ECO:0000313\|EMBL:AES74325.1}

Sequence

Transcript Sequence

>Glyur000597s00020333.1
GTTATTGTAACATATATAAGACAAATTTCATGATCATTTGTAAATAAAAATATATATTTTTTGGTCGAAGTAAATTAAATTTTTTTTGGGTCATAAATTAAACGAATTCAAGACGTGTTAGAGGAAAGGCCCAGAAATGGAGTTGGGCCAGTCCGGGGCGGGTGAGAATGCAAATTCTATGATCCATTTTTTTCCGTAATCCGAAGCAGAAGATAAGAATAAGAAGANAGTTTAGAGCTTAGCCTGTGTTGTGTTGTATATGGCTGAAGTGGTATCCCGTTTTCCGTGTTCTCTGAGATTGAGATAAGTAACTGTAGTGGAGTGGAGTGGAGTGGTGTAGTCAGTCATCAGTCATGTCGTCAATCTCTTCCATTTCGGTTTCAAATGGTCGCTGTTTCAGTTTCAGTTTGGGGACTGTGCCGTTCCAAACCAAGAAGCCATTTTCCCAATTGCAATTCCCAAGAAGCAGAGGGAGAGGGGCGATGGTGGTGGCGATGAGCGTGGAGGCGGGGGTTGGAGTGATGGGCACCAAGTTGGGGATGATGAGCTTCTTCCAACAAGACGGAGTGGTTGTTCCCGTCACCGTCGTCGGCTTCAAGGAAGGCAACATCGTCACCCAGATCAAGACCCACTCCACCGACGGTTACAGCGCCGTCCAGGTTGGCTACCAGAGGGTCAGGGACCGCAAACTCACCAAGCCCGAGATGGGTCATCTCCAGAAGGCCGGTGCCATCCCCATGCGCCACCTTCNGGAGTTCCGTCTCCAATCCGTTGATGGCTTCGACCCCAACCAGCCCCTCCTCTTCGATGAACTCTTCAAGGAGGGTGACCTCGTTGATGTCTCCGGCACCACCATCGGCAAGGGTTTCCAAGGTGGTATAAAGCGTCATAACTTCAAAAGGGGTCCAATGAGCCATGGTTCNAAGAGTCATAGACAACTGGGATCAATTGGTGCTGGAACCACACCTGGGCGTGTATACAAGGGAAAGAAGATGCCNGGTAGGATGGGTGGAACCAAGACCAAGATCAGGAAGCTTAAGATTGTCAAAGTTGATAAAGATCTCAANGTGCTAATGATCAAAGGTGCTCTTCCTGGTAAGCCCGGGAATCTCCTGCGGATAGCTCCAGCCAAGATTGTCGGCAAGAACATTCCAAAGAATTAGTCGATTCCTGTTTTTCTTTTCTTCTTACTTTGTGTTGGCTGGCTTTGATTAGCTTGTTTGTATCTGTTGTGGCCCTTCACTTTCGAGTTTATGTATACTACTCTTCCCCCTTTTTTTAGTCCATTGCATTGATTGAGTTATACAACACCNTACGATTCTGAAATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00597	126703	128647	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000597s00020333.1	PF00297.17	Ribosomal_L3	94	256	4.70E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.706
SRR1783600	control	36.168
SRR1783602	moderate drought stress	30.752
SRR1811619	moderate drought stress	30.104

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.011
DRR006520	Root Summer glycyrrhizin high producing strain	26.656
DRR006521	Root Winter glycyrrhizin high producing strain	35.377
DRR006522	Root Winter glycyrrhizin high producing strain	34.015
DRR006523	Root Summer glycyrrhizin low producing strain	22.481
DRR006524	Root Summer glycyrrhizin low producing strain	22.685
DRR006525	Leaf Summer glycyrrhizin high producing strain	172.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	171.768

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.129
SRR2868004	Drought Stress (root)	33.700
SRR2967015	Control (root)	34.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	191.909
SRR9715740	Leaf	228.744
SRR9715741	Leaf	135.116
SRR9715739	Root	54.008
SRR9715742	Root	44.999
SRR9715743	Root	43.141

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.540
SRR8749028	MeJA induced 9h	22.693
SRR8749029	MeJA induced 9h	35.541
SRR8749030	Uninduced	7.494
SRR8749031	Uninduced	2.018
SRR8749032	Uninduced	8.822

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.904
SRR8400027	Control - Root	63.339