Gene detail information of Glyur000597s00020331 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17690.1 | 3.00E-47 | like heterochromatin protein (LHP1) |
| NR | XP_004501104.1 | 1.45E-120 | PREDICTED: chromo domain protein LHP1-like [Cicer arietinum] |
| Swissprot | tr|Q944N1|LHP1_SOLLC | 4.00E-57 | Chromo domain protein LHP1 |
| trEMBL | tr|V7AUI8|V7AUI8_PHAVU | 1.00E-106 | Uncharacterized protein {ECO:0000313|EMBL:ESW09317.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00597 | 119602 | 122365 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000597s00020331.1 | PF00385.19 | Chromo | 55 | 104 | 7.20E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.768 |
| SRR1783600 | control | 6.919 |
| SRR1783602 | moderate drought stress | 6.032 |
| SRR1811619 | moderate drought stress | 6.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.204 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.607 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.564 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.780 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.901 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.655 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.966 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.310 |
| SRR2868004 | Drought Stress (root) | 18.567 |
| SRR2967015 | Control (root) | 17.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.044 |
| SRR9715740 | Leaf | 4.439 |
| SRR9715741 | Leaf | 3.979 |
| SRR9715739 | Root | 1.015 |
| SRR9715742 | Root | 3.655 |
| SRR9715743 | Root | 3.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.580 |
| SRR8749028 | MeJA induced 9h | 18.570 |
| SRR8749029 | MeJA induced 9h | 9.723 |
| SRR8749030 | Uninduced | 7.776 |
| SRR8749031 | Uninduced | 2.052 |
| SRR8749032 | Uninduced | 2.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.658 |
| SRR8400027 | Control - Root | 12.495 |