Gene detail

Gene detail information of Glyur000597s00020330.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20130.1	9.00E-128	plastid transcriptionally active 14
NR	XP_004487895.1	0	PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform X2 [Cicer arietinum]
COG	YP_007134424.1	5.00E-60	RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|O22056\|SIGB_ARATH	2.00E-116	RNA polymerase sigma factor sigB (Precursor)
trEMBL	tr\|I1L144\|I1L144_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G05510.1}

Sequence

Transcript Sequence

>Glyur000597s00020330.2
ATGGCTTCTTCTTTTCCTATTTATCAGCAGCCAACGCACTGCTTCTTCTCCAACACCCCGGTTCGGTTCGGTTCGGTTCATTTCAATTCATTTCTCTTTTTCCCACCCTTAATTCCGAAGCTTGTTTTCTTCCTAAATAAACAGTTCAAAGGTTCGCGCCGTGGCTTCTTGTGCCCACCCACTTACTCTTTCGGCTCTTATGCTGAATACAAGGCACGACCCGTTAAAGCTTCGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGTTACATCCGAAGCATGCGAGCTTATGGAGTTGATTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTCGAACCTCTTCGTCGACCAAGGGTTGTTATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCGTGGGTCATCCAATATTTGATATCATCAACTCGACAAATCCAGAGACAGATTGGGACTTGAGGTTGGCATGCCTTCTCTTATATTCGTTTGACTGCAAAGACAACTTTTGGCAGTTATATGGTGACTTCTTACCAAGTGCAGATGAGTGCACTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAATCTTGCTTCTACAATGAGAAATCAGCAACAACGAGCCTTAGAATTCTGGATTAAGAACTGGCATAGTGGTGTGCCCCTAAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAATGAGAATTGGTGCACTAACTCAAGATGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACCGGATGCTTGAGGTTCTTATAAATGCTGGACAGCGAATTAGAAAGGGAGATGAGATGACAGTTAATTACATGAACGCACAGATGAATGACATGTTAATGCAAAGATATGGATTTTCATCGCCAGTGGAAGGATGCCGAGGCCTTGTAAGAGGTGCAGAGAAGTTTGATGCTTCCAAGGGTTTTAAGTTCTCCACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAGTCACTTTCTGTTCAGTCAAGAACTATTCGCTTGCCNTTCCACATGGTGGGGGCGACTTACAGAGTGAAGGAGGCAAGAAAACAACTGTATAGTGAAAATGGAAGACAGCCCGATGATGAAGAAGTTGCTGAAGCGGCTGGGATGTCAATGAAGAGCCTTAATGCTGTACTTTTGACCCCAAAAGCTCCCAGATCTCTGGAACAGAAAATCGGGATCAACCAGAATCTTAAACCTTCAGAAGTGATTGCTGANCCTGATGCTGAAACAGCTGAAGAGCAGCTCACTAAGGAATTCATGAAAAAGGACCTGGAGAAGGTACTGGACAGTCTCAATCCGAGAGAGAAACAGGTCATTAGATGGAGATTTGGTATGGATGATGGAAGGATGAAGACCCTGCAAGAGATAGGGGAGATGATGGGTGTGAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAGAACAAGAAGAGAACCAAGCATTTGCAGCAGTATTTGGTTTCATAACCCTACAGAATATATTGATATTAAACCGCTGGATGAGTTAGCTTATTTGATACTTGTCAGGTCCTGATCCCTTTGTTCTTCATCTGTATGTGCTTCCACCATTTTTCTTCATTCTCCAAGAGAAAACAAAAAGGTTATTTTCAGTAGTATACTAGGAAATGNATGTAGACACAAACGGATAACTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00597	112794	118459	+

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0005515 protein binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000597s00020330.2	PF00856.23	SET	108	331	8.90E-17
Glyur000597s00020330.2	PF04542.9	Sigma70_r2	351	392	1.80E-07
Glyur000597s00020330.2	PF04539.11	Sigma70_r3	405	478	3.90E-16
Glyur000597s00020330.2	PF04545.11	Sigma70_r4	491	544	2.50E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.923
SRR1783600	control	6.724
SRR1783602	moderate drought stress	12.537
SRR1811619	moderate drought stress	12.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.842
DRR006520	Root Summer glycyrrhizin high producing strain	9.001
DRR006521	Root Winter glycyrrhizin high producing strain	8.032
DRR006522	Root Winter glycyrrhizin high producing strain	8.126
DRR006523	Root Summer glycyrrhizin low producing strain	10.923
DRR006524	Root Summer glycyrrhizin low producing strain	11.352
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.941
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.664
SRR2868004	Drought Stress (root)	7.610
SRR2967015	Control (root)	11.076

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.980
SRR9715740	Leaf	47.787
SRR9715741	Leaf	29.994
SRR9715739	Root	2.345
SRR9715742	Root	6.957
SRR9715743	Root	6.773

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.985
SRR8749028	MeJA induced 9h	14.730
SRR8749029	MeJA induced 9h	8.067
SRR8749030	Uninduced	4.783
SRR8749031	Uninduced	2.135
SRR8749032	Uninduced	3.731

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.994
SRR8400027	Control - Root	9.622