Gene detail information of Glyur000597s00020325 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004487891.1 | 1.73E-43 | PREDICTED: uncharacterized protein LOC101504855 isoform X1 [Cicer arietinum] |
| trEMBL | tr|M5WIJ3|M5WIJ3_PRUPE | 8.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:EMJ13096.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00597 | 97771 | 100964 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000597s00020325.1 | PF12854.2 | PPR_1 | 53 | 83 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.355 |
| SRR1783600 | control | 9.290 |
| SRR1783602 | moderate drought stress | 8.198 |
| SRR1811619 | moderate drought stress | 8.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.009 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.866 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.823 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.830 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.596 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.561 |
| SRR2868004 | Drought Stress (root) | 4.072 |
| SRR2967015 | Control (root) | 4.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.620 |
| SRR9715740 | Leaf | 1.329 |
| SRR9715741 | Leaf | 2.441 |
| SRR9715739 | Root | 2.174 |
| SRR9715742 | Root | 3.090 |
| SRR9715743 | Root | 2.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.706 |
| SRR8749028 | MeJA induced 9h | 2.348 |
| SRR8749029 | MeJA induced 9h | 2.802 |
| SRR8749030 | Uninduced | 2.719 |
| SRR8749031 | Uninduced | 1.237 |
| SRR8749032 | Uninduced | 4.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.030 |
| SRR8400027 | Control - Root | 2.701 |