Gene detail information of Glyur000597s00020324 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30900.1 | 0 | VACUOLAR SORTING RECEPTOR 6 |
| NR | XP_003534862.1 | 0 | PREDICTED: vacuolar-sorting receptor 6-like [Glycine max] |
| COG | NP_719336.1 | 3.00E-06 | surface-associated serine protease [Shewanella oneidensis MR-1] |
| Swissprot | tr|Q9FYH7|VSR6_ARATH | 0 | Vacuolar-sorting receptor 6 (Precursor) |
| trEMBL | tr|I1L142|I1L142_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G05490.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00597 | 91889 | 96991 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000597s00020324.1 | PF02225.17 | PA | 60 | 162 | 8.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.686 |
| SRR1783600 | control | 6.951 |
| SRR1783602 | moderate drought stress | 7.429 |
| SRR1811619 | moderate drought stress | 7.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.486 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.156 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.825 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.730 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.766 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 57.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 57.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 57.474 |
| SRR2868004 | Drought Stress (root) | 76.142 |
| SRR2967015 | Control (root) | 66.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 169.265 |
| SRR9715740 | Leaf | 165.304 |
| SRR9715741 | Leaf | 215.250 |
| SRR9715739 | Root | 3.429 |
| SRR9715742 | Root | 17.905 |
| SRR9715743 | Root | 15.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.455 |
| SRR8749028 | MeJA induced 9h | 28.807 |
| SRR8749029 | MeJA induced 9h | 8.565 |
| SRR8749030 | Uninduced | 32.587 |
| SRR8749031 | Uninduced | 32.750 |
| SRR8749032 | Uninduced | 11.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.363 |
| SRR8400027 | Control - Root | 45.311 |