Gene detail

Gene detail information of Glyur000597s00020317.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20140.1	0	Leucine-rich repeat transmembrane protein kinase
NR	XP_004488225.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-58	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	0	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|I1MGT0\|I1MGT0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G16670.1}

Sequence

Transcript Sequence

>Glyur000597s00020317.1
ATGGCACCAACAACACTTGTAGTTCTGCTTCTCTTCATGAGCTTCATCTCTTGTGGTCTATTACTATTAGTCCCCAATTNCCATGGTTTAGAGAGTGATGATACTCTGAGAGTGCTTTTGGAGGTGAAATCATCGTTCTTGGAAGACCCTGAAAATGTTCTGAGTGATTGGTCACAGAACAACCCAGATTACTGCACTTGGAGAGGGGTGTCTTGTAGTAATGACTCGGTGCATCAAGTGGTGGTGGGACTCAACCTGTCCGACTCGTCACTCACTGGGTCAATATCACCCTCACTCGGCCGTTTGCAAAACCTGCTCCACCTTGATCTCTCATCTAACCGCCTCATGGGTCCCATTCCACCTACTATATTCCCCAACCTCACTTCGTTGGAATCTCTGCTTCTCTTCTCCAACCAACTCACGGGTCCCATTCCCACTGAGTTGGGCTCGCTAACGAGTCTCCGAGTTCTGCGACTCGGTGACAACGGACTCACTGGTGCGATCCCCGCNTCNGTTGGCAACNTGGCTAACCTTAACACCCTTGCTTTACGCCAATGCCGTCTCAGCGGTCCGATTCCGCCCCAACTAGGTCGACTCAGTGAGTTGGAGAACCTGAACCTGCAGGACAACGAGTTGACGGGTCCGATTCCGCCCGAGTTGGGGAACTGCTCAAGTCTCGTCAGATTCATCGCTGATATCAACAGACTCAATGGCTCGATCCCGAGTGAACTGGGTCAACTCAGGAAACTCCAACATATCAACCTTGCCATCAACAGCCTAANCGGTGAGATTCCGAGTCAACTCGGTCAGCTGAGTGAGCTCGTCNCTCTGAGTTTTTCNGAGAACCAGCTCGAGGGTCACATTCCACCGTCTCTAGCTCAACTAGGTAAGCTTCAAACTCTCGACTTGGCCATCAACAAGCTCAGTGGAGGGATTCCAGAGGAGTTGGGTAACATGGGTCAGCTGAGATACATGTTTCTCAATCAAAACCCACTCTATGGAACCATTCCAAGAACCATATGCTCCAATGCAACAAGTTTGGAGCAATTGCTGATATCAGAGACTGGACTTCATGGTGAGATCCCAGCTGAGTTGACTCAGTGCCGCTCACTGAAACAGCTTGATTTGTCCAGAAATTTCCTCAATGGTTCAATACCTAATGAGGTTTATGAGTTGGTGGGGCTAACTGATCTCTGGCTTCAAAACAACAGCTTGGTTGGTTCAATCTCTCCCTCCATAGGGAACCTCACCAACTTGCTGATACTTACATTGAATCACAACAAGTTGCAGGGTTCTCTGCCCAAAGAGATTGGGAGGCTTGGGAAGCTGAAAACNCTGTTCCTTTTTGAGAATCAGCTTTCAGGGAAGATACCTTTGGAGATTGGTAACTGTTCAAGCTTGCGATTGCTTGATTTATATGGGAATCATTTTAGTGGGNGGATTCCAATCACCATTGGGAGATTGAAAGAGTTGAACTTTCTTGACCTTAGGCAGAATGAGCTTGTGGGTGAGATTCCAGCCACACTTGGTAACTGTCATAAACTGACTCTGTTGGATTTGGCAGACAATAAGCTCTCAGGTGGCATTCCTGCAACATTTGGGTTCCTCACAGCCATGGAACAGTTACTGCTCTACAACAACTATCTTGAAGGTAGCATTCCTCTCCAAATGTTAAATGTAGCAAACATGACAATAATTAACATTTCAAACAACAGTCTGAATGGGAGTCTTGGTCCATTGTGTAGCTCTCGGTTGTTTCTTTCTTTTGATGTCACAGGCAATGCATTTGACGGTGAAATCCCTTCTCAATTGGGAAACTCACACTCCCTTGAGAGGCTAAGATTGGGACGCAACAAGTTCTCTGGTGAAATCCCAAGGACATTGGGGAAAATCACTAACTTGTCATTGATAGACCTCTCTCGAAACTCACTCACAGGACCAGTACCAGATGAGCTATCTTTGTGTAGTAAACTGGCCGCAATTGATTTGAGCAACAACCTTCTATCTGGACACATACCTTCATGGCTTGGAAGTTTGCCTCGGTTGGAAATGCTTAAGCTTTGCTTCAATCAATTTTCTGGGTCTCTTCCACTAGGCCTATTCAAACTAACCAAGTTGCTGGAACTTACCTNGGAAAGCAACTCTCTTAATGGAAGTCTCCCAGGTGATGTTGGTGATCTTGAATCCCTTAATGTCCTAAGACTTGACCATAATAATTTCTCTGGACCAATCCCTCCTGCAATAGGTAAGTTGAGAAATCTTTATGAGCTCCACTTATCCAGAAATAGCTTTATTGGGGAGATACCAGCTGAGATTGGGAATCTCCAAAACCTCCAAACCATTTTAGACCTCAGTTACAATAATCTCTCTGGTCACATCCCATCTTCCCTTGGTTTGCTTTCAAAATTGGAAGCACTAGATCTTTCTTACAACCAACTCACAGGGGAAGTTCCTCTACCCATTGGTGAAATGAGGAGCTTGGAAATGCTTAATCTCTCTCACAATGACTTTCAAGGTGCATTGGATAAGGAGTTCTCCCGCTGGCCATATGAGGCATTTGAAGGGAACCTTCATCTTTGTGGAGCCTCTCTTGGTCGCTGCAACCGTGGTGGTGGTGATTCTCGCAACAAGCTATCAGGGTTAANAGAGGCATCAGTGGTTATAGTATCTGCCATTTCAACATTTGCTGCAATTGCACTACTGTTACTTGCAGTAAAATTCTTCTTGAAAAACAAACATGAGCTTTTCAGGAAAGGCAGTGAAGTCAGCTATGTTTTCTCTTCCTCTTCATCACAAGCACATAGAAGACTGTTGCTCCCATTTGGTGCTGCTGGAAGGAGAGATTTCAGGTGGGAAGACATCATGGATGCCACAAACAATCTGAGTGATGACTTCATAATAGGTTCTGGTGGTTCTGGAACAGTCTACAGAGTTGAATTGCCTACTGGAGCTGTGGCTGTCAAGAAGATCTCATTGAAAGACGATTACCTGTTGAACAAAAGCTTTATAAGAGAAGTCAAGACTTTGGGGAGGATCAAGCACAGACATCTGGTGAAGCTGATTGGTTGTTGTACCAATAGAAGCAAAGGANCTGAATATGCATACTCACTGAAGGCAACAGAGAAGAGTGATGTTTACAGCATGGGGATTGTGCTGATGGAACTTGTGAGTGGTAAAATGCCAACAGATGCAGCAACTTTCAGAGCAGATATGGACATGGTGAGATGGGTGGAGATGAAGATTGACATGCAACAAGGAAGTGGTGGACGTGAGGAATTGATTGATCCTAAGCTCAAACCCCTTTTACCTGATGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCATACAGTGCACCAAAACTGCACCACAGGAGAGGCCATCATCAAGGCAAGTATGTGATCTTCTTCTACATGTGTCCAAGAACAAAAAGGTGAACTTTGAGAAGATGAATTTGGATCATTACAACTGA

Protein Sequence

>Glyur000597s00020317.1
MAPTTLVVLLLFMSFISCGLLLLVPNXHGLESDDTLRVLLEVKSSFLEDPENVLSDWSQNNPDYCTWRGVSCSNDSVHQVVVGLNLSDSSLTGSISPSLGRLQNLLHLDLSSNRLMGPIPPTIFPNLTSLESLLLFSNQLTGPIPTELGSLTSLRVLRLGDNGLTGAIPASVGNXANLNTLALRQCRLSGPIPPQLGRLSELENLNLQDNELTGPIPPELGNCSSLVRFIADINRLNGSIPSELGQLRKLQHINLAINSLXGEIPSQLGQLSELVXLSFSENQLEGHIPPSLAQLGKLQTLDLAINKLSGGIPEELGNMGQLRYMFLNQNPLYGTIPRTICSNATSLEQLLISETGLHGEIPAELTQCRSLKQLDLSRNFLNGSIPNEVYELVGLTDLWLQNNSLVGSISPSIGNLTNLLILTLNHNKLQGSLPKEIGRLGKLKTLFLFENQLSGKIPLEIGNCSSLRLLDLYGNHFSGXIPITIGRLKELNFLDLRQNELVGEIPATLGNCHKLTLLDLADNKLSGGIPATFGFLTAMEQLLLYNNYLEGSIPLQMLNVANMTIINISNNSLNGSLGPLCSSRLFLSFDVTGNAFDGEIPSQLGNSHSLERLRLGRNKFSGEIPRTLGKITNLSLIDLSRNSLTGPVPDELSLCSKLAAIDLSNNLLSGHIPSWLGSLPRLEMLKLCFNQFSGSLPLGLFKLTKLLELTXESNSLNGSLPGDVGDLESLNVLRLDHNNFSGPIPPAIGKLRNLYELHLSRNSFIGEIPAEIGNLQNLQTILDLSYNNLSGHIPSSLGLLSKLEALDLSYNQLTGEVPLPIGEMRSLEMLNLSHNDFQGALDKEFSRWPYEAFEGNLHLCGASLGRCNRGGGDSRNKLSGLXEASVVIVSAISTFAAIALLLLAVKFFLKNKHELFRKGSEVSYVFSSSSSQAHRRLLLPFGAAGRRDFRWEDIMDATNNLSDDFIIGSGGSGTVYRVELPTGAVAVKKISLKDDYLLNKSFIREVKTLGRIKHRHLVKLIGCCTNRSKGXEYAYSLKATEKSDVYSMGIVLMELVSGKMPTDAATFRADMDMVRWVEMKIDMQQGSGGREELIDPKLKPLLPDEEFAAFQVLEIAIQCTKTAPQERPSSRQVCDLLLHVSKNKKVNFEKMNLDHYN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00597	41710	45619	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000597s00020317.1	PF08263.7	LRRNT_2	37	73	2.60E-11
Glyur000597s00020317.1	PF00560.28	LRR_1	104	127	0.13
Glyur000597s00020317.1	PF13504.1	LRR_7	152	166	8.7
Glyur000597s00020317.1	PF00560.28	LRR_1	202	223	0.41
Glyur000597s00020317.1	PF00560.28	LRR_1	370	388	1.1
Glyur000597s00020317.1	PF13855.1	LRR_8	752	813	2.00E-07
Glyur000597s00020317.1	PF07714.12	Pkinase_Tyr	967	1028	2.00E-06
Glyur000597s00020317.1	PF00069.20	Pkinase	1038	1134	3.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.054
SRR1783600	control	0.054
SRR1783602	moderate drought stress	0.054
SRR1811619	moderate drought stress	0.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.031
DRR006520	Root Summer glycyrrhizin high producing strain	0.031
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.007
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.026

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.730
SRR2868004	Drought Stress (root)	3.574
SRR2967015	Control (root)	1.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.128
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.042
SRR9715739	Root	0.000
SRR9715742	Root	0.130
SRR9715743	Root	0.089

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.197
SRR8749028	MeJA induced 9h	0.073
SRR8749029	MeJA induced 9h	0.133
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.035
SRR8400027	Control - Root	0.132