Gene detail

Gene detail information of Glyur000597s00020316

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30860.1	1.00E-32	RING/U-box superfamily protein
NR	XP_004488226.1	0	PREDICTED: serine-rich adhesin for platelets-like [Cicer arietinum]
Swissprot	tr\|Q7XI08\|XB34_ORYSJ	4.00E-09	Probable E3 ubiquitin-protein ligase XBOS34
trEMBL	tr\|K7MBJ5\|K7MBJ5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G16661.1}

Sequence

Transcript Sequence

>Glyur000597s00020316.1
ATGGCATCTTCCCAAGTTGAAATAGCTTCATCTTCGCCCTTCGGTTACGTTCTGAGGGACCGTAATCACCGTGATGGATGCAGGGAAAACAATGTCTCTTTCCAAAGGAACATCAAGAGCTTTGTCATNGACCACCTTAACACGTGCATGTCNATATCATCCTCTGATGGTTCCTNAACAACAAATGAGAACAACAACAANGTTGCTGGCTCTTGGGTTTCAACANCAGCAACAGCCAAGAACAAAACAAACAACCTTGCAAGGCTACGTTTCACAAGAAGCAACCACAATCACAACAACAAGAAGAAGGACAAGGATGAATCATCTTCTCTGGCTTCCTTGATCAGCCCGAGACACTCGCGGCTTCTCGATCGATGGGCCGCGAGACAAGCTCGTGAAATGGTGTCAACATTGGAGAATGAAGCTGAGTTGTTGTCCATTGACAACAGCAACAACAACAATGGTAATGATGATGATGCTAACAACAACAACAACAACAACATGTCTGCAAGGACATCAAGTTCCACCTCTGATGAGTGCTCCTCAAACCTTGGTGCATCTTCCCTTGTTCAGATATGGGAAAAGAGGCTGAACAAATCCAATTCCTCCAAACCAAACACCCCAGTAGAGAGGACCAGTGCCACCTCCTGCAACAACAACAACGAGAATGANTTTTCTGTGGTTGAAGAACACAGAGAGTCAGAAGCAGGGGAGTGTTGTTTTGAAAGGCCATCATCATCATCATCATCATCAGGGAATGAGGAACCGTTCCCTGATTGGGAATCCGAAGACAAGACAACACATAGTGATCAATCGAGGTGGGGTTCTTCGGAGAGTGACAGGGTCAGTGTTGCAGACATCATAAAGAAGCTCACTGCCACAACTCAAAATCAGAGTCCACCTCCATCGTTTTGGGATGACAATGACCATATTGAAGGGTGTTGTGGTAGCACTAGCAGCGTGGCAAGTTCTCCTTGTAGAGATCGTGATGGTGGTGGTTTCACACCAGAACGTACAGAACATAGGGCTTTGCCTCAGGTCACATGTTGCCCACGAATCAGAGGGCGCCAAGCGTTGAACGATTTGCTTTCATTACTTCGACTTAGATTATTACAACGTNGCGCGGCAGCTAATGATCCATCCCACCAGAAATCAACACCATCCGAAGTGAAAAGACAGCCACGGGGATCTGCTATTATGCAACTAAGGGAAATATTTAGCGCTGGGATTGAACAAAGAAGGACAGTCCAGGCAGAAGTAGCTAACACAAGAAGTCCTCATAGGGAGATAGTAAACAACACCACGCAATTGGAGAATTCTCCCAATGCTGATCAACTCAGCAAAGAGACATGCAGCCAGATGAATGNTCATGGCACTATCAATCACTCTACAGAATCCACACAAAAGTCAGTGTCTCATACTAGAGAAGAAGATCATCCAAGTTCAGATGTCAAATTCCAAGAAACAAGTTTCGAGGTTTGGCATGATTACTCGCAGGAAACTGTTNAGGCAACCACATCAATGACTGATTCAAATCCAAATGTGAGGGCCGAGAAGGTAGAGACAAGCANCCAACAGTATGCTATAGCCAAAGGTAGTTATGAGGAGACAGTAGATGAGGAAGAGGCAAGTAACCAGAACTATGGTGAAAGCAGTTATGAAGAGATAGTGGAAGAGTTAGAGGGCATTCACCAGAACTATGATGAAACTAATTATGACTGGATCAGTGAAATTTCTCGGCCTAGGAGCTATTGGGAAGAGCGCAGGCAAGCATGGTATAGAGAGATGCTTNACACTGGTTCTCACAATGAGGATATACGAGAGCTTCTTCAAAGAAAAACAGTGTCAAGTTTCCTTTCTAGTGACTTCCGGGAAACAATGGATAGATTGATGGAATCTCATAGGGGAACACAAACACATTTAGTCAGTAGTCGAGATGATGAGGATGACAACCAAGGGTTGATAGCTTTTTTACAAGAACACATGCATTCTAGAAGCACTCCTCAAGNAGATGGAAGAGAGAGAAGGGAGGAGGAAAGGATAGATGAGGAAGAAGAAGAGGAGGAGGAAAAGGCAGATGAGCAGGAGCATGAAGAGGAGCATGAGGGGGAGAGCTTGATAAGTGGTTTGGATCATGAAGTTGGAGATTACTCTAATCAATCCTCATCATGGAGTTATAGAGACAATGAAGCCAGTGATGATCTTGATAGAGTTGCNTCTACATCTTCACAACCTTGTCAATCTCACTCTTTCTATCAGGATAGTCAGCGAAACTCTCCATCCAACAATCATCATTCCATTGAAATGGAACTCATATATGATATGAGAGGCCATATGNCTCAACTTTATCATGAGATGTCTGAGCTAAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCAGTTACAACAATCCATGAACCAAGAGGGTCACACAGTTAAAAAAGAAGCAAAGAAGTCCCATAACAAGGCTCCTAAGAAAGGCAACTGCTGTATTTGCTATGAGATGAAAGTTGATTCGCTGTTATACAGGTGTGGACACATGTGTACCTGTCTGAAGTGTGCCAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCGTGCTAAAATAGTAGATGTTGTTCGAGTATATGTTGATGCTTAGCCTGTCTTAGTCTCGGTGGACAGAGTCTCACTCTAAGGGACCATCCTTTAGACCTAAAACTAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00597	34713	39089	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000597s00020316.1	PF13920.1	zf-C3HC4_3	828	876	3.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.674
SRR1783600	control	0.687
SRR1783602	moderate drought stress	0.577
SRR1811619	moderate drought stress	0.547

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.808
DRR006520	Root Summer glycyrrhizin high producing strain	0.815
DRR006521	Root Winter glycyrrhizin high producing strain	0.137
DRR006522	Root Winter glycyrrhizin high producing strain	0.240
DRR006523	Root Summer glycyrrhizin low producing strain	0.280
DRR006524	Root Summer glycyrrhizin low producing strain	0.290
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.263
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.455

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.505
SRR2868004	Drought Stress (root)	1.402
SRR2967015	Control (root)	1.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.636
SRR9715740	Leaf	11.048
SRR9715741	Leaf	5.057
SRR9715739	Root	0.036
SRR9715742	Root	0.447
SRR9715743	Root	0.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.780
SRR8749028	MeJA induced 9h	2.474
SRR8749029	MeJA induced 9h	0.802
SRR8749030	Uninduced	0.128
SRR8749031	Uninduced	0.366
SRR8749032	Uninduced	0.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.200
SRR8400027	Control - Root	1.612