Gene detail information of Glyur000597s00020315 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46550.1 | 2.00E-106 | Fasciclin-like arabinogalactan family protein |
| NR | XP_007138874.1 | 0 | hypothetical protein PHAVU_009G244800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SNC3|FLA4_ARATH | 4.00E-129 | Fasciclin-like arabinogalactan protein 4 (Precursor) |
| trEMBL | tr|V7B1X7|V7B1X7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW10868.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00597 | 29803 | 31098 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000597s00020315.1 | PF02469.17 | Fasciclin | 214 | 349 | 7.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.944 |
| SRR1783600 | control | 57.788 |
| SRR1783602 | moderate drought stress | 35.368 |
| SRR1811619 | moderate drought stress | 35.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.663 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.424 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.512 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.565 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.357 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.627 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.768 |
| SRR2868004 | Drought Stress (root) | 21.522 |
| SRR2967015 | Control (root) | 17.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.192 |
| SRR9715740 | Leaf | 5.767 |
| SRR9715741 | Leaf | 6.758 |
| SRR9715739 | Root | 30.327 |
| SRR9715742 | Root | 19.046 |
| SRR9715743 | Root | 18.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.619 |
| SRR8749028 | MeJA induced 9h | 12.569 |
| SRR8749029 | MeJA induced 9h | 5.244 |
| SRR8749030 | Uninduced | 0.950 |
| SRR8749031 | Uninduced | 0.001 |
| SRR8749032 | Uninduced | 0.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.704 |
| SRR8400027 | Control - Root | 18.474 |