Gene detail information of Glyur000596s00021329 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62440.1 | 1.00E-42 | Protein of unknown function (DUF3223) |
| NR | XP_007155309.1 | 6.70E-90 | hypothetical protein PHAVU_003G190000g [Phaseolus vulgaris] |
| Swissprot | tr|Q5D869|NRPE1_ARATH | 5.00E-07 | DNA-directed RNA polymerase V subunit 1 |
| trEMBL | tr|V7CD67|V7CD67_PHAVU | 2.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:ESW27303.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00596 | 118552 | 120421 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000596s00021329.1 | PF11523.3 | DUF3223 | 106 | 178 | 1.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.569 |
| SRR1783600 | control | 9.752 |
| SRR1783602 | moderate drought stress | 15.092 |
| SRR1811619 | moderate drought stress | 14.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.440 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.508 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.457 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.763 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.759 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.924 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.088 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.250 |
| SRR2868004 | Drought Stress (root) | 21.442 |
| SRR2967015 | Control (root) | 20.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.803 |
| SRR9715740 | Leaf | 20.130 |
| SRR9715741 | Leaf | 10.531 |
| SRR9715739 | Root | 18.583 |
| SRR9715742 | Root | 18.948 |
| SRR9715743 | Root | 17.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.712 |
| SRR8749028 | MeJA induced 9h | 15.391 |
| SRR8749029 | MeJA induced 9h | 17.530 |
| SRR8749030 | Uninduced | 3.978 |
| SRR8749031 | Uninduced | 3.452 |
| SRR8749032 | Uninduced | 4.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.418 |
| SRR8400027 | Control - Root | 17.580 |