Gene detail

Gene detail information of Glyur000596s00021323

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74460.1	1.00E-149	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_003549680.1	0	PREDICTED: GDSL esterase/lipase At1g74460-like [Glycine max]
COG	YP_001869007.1	1.00E-20	GDSL family lipase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9CA68\|GDL31_ARATH	0	GDSL esterase/lipase At1g74460 (Precursor)
trEMBL	tr\|I1MTU3\|I1MTU3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G10900.1}

Sequence

Transcript Sequence

>Glyur000596s00021323.1
ACAAACATGGTGTTCAATAAGGCGCTAGTTGTTATAGTAGTCACCATTTTTTTGGGATTAATTGGGCTTAAAGGGTGCCATTGCAANATTGTGCAGTTCATTTTTGGGGACTCTCTCTCGGATGTTGGAAATAACAGGTATCTCTCTAGAAGCCTTGCGCAGGCAAGCCTCCCTTGGTATGGTATAGACATGGGTAACGGGTTGCCTAATGGAAGGTTCACTAATGGTCGCACAGTTTCTGATATAATAGGTGACAGTTTAGGCCTCTCTAGGCCCCCTCCAGTCCTGGACCCAACATTAAATGAAAAAGATATACTAGAAAACGGACTGAACTATGCTTCTGGTGGTGGCGGTATCTTGAATGAAACTGGCGCCTATTTTATCCAAAAGTTATCTCTGGACAAACAAATTGAGCTGTTTCAGGGGACACAAGAATTAATCAGAAGCAAAATTGGAAAAAAGGCTGCAGTCAAGTTTTTTCGTGAAGCTCAGTATGTTGTTGCTCTAGGGAGCAATGACTTCATCAACAACTACTTGATGCCTGTTTACACCGATTCATGGACATACAATGATGAAACCTTCATGGACTACTTGATGGGAACACTTCGAAGACAACTCAAGTTACTTCATAGTTTAGGAGCAAGGCAATTGATNGTTTTTGGGCTGGGTCCAATGGGGTGCATTCCCCTTCAAAGGGTGCTTAGTACAACTGGGAATTGTCGAGAAAAAGCAAACAACCTGGCTAGTGCCTTTAACAAAGCTGCAAGTGAACTAATGGATGACTTGATGAAGCATCTTCCTAACTCCAACTACAGATTTGGAGATGCATATGATGTTGTCTATGACTTGATTAGCAATCCAANTAAGTACGGATTCCAAAACTCAGACTCACCCTGTTGTTCCTTTGGGAGGATTCGACCCGCTCTTACATGTGTACCTGCATCAACACTGTGCAAAGATAGAAGCAAATACGTGTTTTGGGATGAGTACCACCCCACAGACAGTGCTAATGAGCTAATTGCAAATGAGCTCATCAAGAAATTTGGANTTTCACATGTTGATCAAAGGGTTGCTCCTTCACCAGAACCTGCTGTTGCTCCATCTCCACAAGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00596	99654	101692	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000596s00021323.1	PF00657.17	Lipase_GDSL	33	344	7.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	77.771
SRR1783600	control	85.789
SRR1783602	moderate drought stress	57.291
SRR1811619	moderate drought stress	57.007

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.082
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	272.099
SRR2868004	Drought Stress (root)	138.749
SRR2967015	Control (root)	98.764

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.002
SRR9715740	Leaf	0.210
SRR9715741	Leaf	0.317
SRR9715739	Root	106.786
SRR9715742	Root	31.945
SRR9715743	Root	46.542

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.030
SRR8749031	Uninduced	0.034
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	350.150
SRR8400027	Control - Root	362.479