Gene detail

Gene detail information of Glyur000596s00021319

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47500.1	3.00E-78	cycling DOF factor 3
NR	XP_003549682.1	0	PREDICTED: cyclic dof factor 3 [Glycine max]
Swissprot	tr\|Q8LFV3\|CDF3_ARATH	1.00E-129	Cyclic dof factor 3
trEMBL	tr\|K7MKW7\|K7MKW7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G10920.3}

Sequence

Transcript Sequence

>Glyur000596s00021319.1
GTTGAACAATATAAATAATAAGACTAATTTGATAAAATAGTTGCTCTCACTCGTTAATTTATTATATTTTTTAATTTGTTTGCAAAAANCTTAAAAAAACTATTTTAATCATTGGATTACTTCATTGATCTAACAAAGGAGCTTATTTGCCGGTGCATTGCACGGGACGCACATATTAGTAAATAAAAAGGGGGAGCAATGCCCTTCCACGTGTCAGATGCCCATTACATGTTATGATTCTGGGTCTAGAGGAAAGACGTCGATTTGGCACGACTGCTTCCAATCAGGTAACGCCACGGTGGCCAAGGTGTTTCCGAGACGAAAAAGTGGTGACAGGGGAATGGAAAAAGAAAAGGGAGGGTGCACGCAAGGAGCGCGCCACCGAGAATCAAACAGGGAGAAGAAAAAGAAAAAGAAAATCAATTTGTAATTGAGGCCACAAAAAGAACTTGTGGCCAAGAATTGAAACCTGGGTCTGACGTGGCATCGGACTCTGGTTTAAACGGATCAAAAAAATCCAATTCGACGTGCTTCCATTGACAATTCTCACGTCAAAAACCCAAACCAAAACACACTCACACACACAGCAAAATAGTAACGCACTCTCTCTCTCTCTCTCTCTCTAACGAACCCACCACCAACTGTAAAGTCCTCCTCACTAAATGCAGGAAACTAGAGACCCCGCAATCAGGCTTTTCGGCCAGAAGATTCCCCTTCCGGGCGATTCCGACCCTCCTTCCCTTTCGCCACCGGCAATCGATGTTGACAAAACAGAGGAAGAAGAGGGTGGTGATGGAGGAGGACAAGAGTCACAAGAGGAGGAATACCAAACAGACGAGGATCCAGAAGCTGAAGGTGTTACCGAGGGAGAGCAAGAAGCCGATCCTCCTCCAAATGCAGAAGAGGCTAAGAATTCAGCCATCGTGAACCCAGAAACACCTTCCATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCACAAAATCAAAAAGTGACGACAAGTCAGAGAAGGAACAACAAGAACAACCACAAGAGAAAACCCTGAAGAAGCCAGAAAAAGTGCTACCATGTCCCCGCTGCAATAGCATGGACACAAAGTTCTGTTACTACAACAACTACAACATCAACCAGCCACGTTACTTCTGCAAAGCGTGTCAAAGATACTGGACTGCTGGTGGCACCATGAGGAATGTACCAGTAGGGGCAGGAAGAAGAAAGAACAAGAACTCTGCCTCGCATTATCACCACATAACTATCTCCGAGGCTCTTCAGGCAGCTATAATCGATGCTCCCCCCAATGGGACTCAAACTCACCTTCCTCCCACGTTGAAAAGCAATGGCACGGTCCTCAGCTTTGGATTAGATGCACATGCACCTATCTGTGATTCCATGGCATCTGTCCTTAACCTTGGGGAGAAGAAGAAGGCTCTTAATGGTACTAGAAACGGATACCATCATGGCTTAGAGGATCAAAGACTTAAAAAGAATGGTGATGATCACTGCTCAAGTGGTGCATCTTCCAATATTACGGTTTCAAGTTCCATGCCACAACCGGTGCTCCAAAACAATGGTTTCCTTCCTCAACTTCCACCATGCATTCCTCCTCCTCTTCCTAGTGTTCCTTGGCCTTATACATGGAATTCTCCAATTCCCCCACATGCNTTGTGTCCTTCAGGATTTCCTCCCATGCCATTCTATCCACCACCTGCTTTTTGGAACGTTCCATGGTATCCCTCACATTCCCCAAAGTCTCCAAGCTCGGGTCCAAATTCTCCAACTTTGGGGAAGCACTCGAGGGATGGTGACATGATTAAACAAGAAGACCCTTTGCACAAGGAGGAAGAAGCAGCAGCAGCACCAAAGCAGAGAAACGGGTGTGTTTTGGTTCCCAAAACGTTGAGAATTGATGACCCGAATGAGGCTGCCAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAACGAGTCAGTGAGTGGTAGGGGAGGAAGTATGTTTAAGGCCTTCCAATCAAAGAAGGAGGAGAAGAATCACGTTGAAGCCTCTCCGGTGTTGATGGCCAACCCTGCAGCACTATCNAGATCCTTTAATTTCCACGAAAACTCCTGATTTAGTGAGATGGGTGGGAACTAATTTTTGTCTCTCCTTTCATTTGACGCCTATAAATNGAATAGGACGTTCCTTTTCATGTGCCTAGTTTGCTGAGTTTGAGTTCATGTACATATATATANAGTATATATGTGAAATAGTGGCCTTAATTTAGCCTAGAGATGGAAAAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00596	81226	84821	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000596s00021319.1	PF02701.10	zf-Dof	131	191	9.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.075
SRR1783600	control	2.055
SRR1783602	moderate drought stress	6.883
SRR1811619	moderate drought stress	7.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.880
DRR006520	Root Summer glycyrrhizin high producing strain	1.790
DRR006521	Root Winter glycyrrhizin high producing strain	6.791
DRR006522	Root Winter glycyrrhizin high producing strain	6.899
DRR006523	Root Summer glycyrrhizin low producing strain	0.821
DRR006524	Root Summer glycyrrhizin low producing strain	0.776
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.118
SRR2868004	Drought Stress (root)	13.322
SRR2967015	Control (root)	7.150

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.818
SRR9715740	Leaf	23.869
SRR9715741	Leaf	39.004
SRR9715739	Root	1.350
SRR9715742	Root	7.036
SRR9715743	Root	6.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.513
SRR8749028	MeJA induced 9h	7.526
SRR8749029	MeJA induced 9h	3.313
SRR8749030	Uninduced	0.795
SRR8749031	Uninduced	0.737
SRR8749032	Uninduced	0.932

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.681
SRR8400027	Control - Root	16.077