Gene detail

Gene detail information of Glyur000596s00021318

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47490.1	7.00E-65	HNH endonuclease
NR	AFK48545.1	2.22E-101	unknown [Lotus japonicus]
trEMBL	tr\|I3T7Q3\|I3T7Q3_LOTJA	8.00E-102	Uncharacterized protein {ECO:0000313\|EMBL:AFK48545.1}

Sequence

Transcript Sequence

>Glyur000596s00021318.1
TAAATATTCAAAAAAAATTTGTATACATTAACTTGATACAGTGTNTTAAATAAATTGTGCGAATCCAAACAACGCTATAAAACATTTATTTCATATCGGATAAAGAAACAGAAGTGGAAGAGCGGAGGCAAATGAGTGGCGGTTCTCCTGATGCTGGCAGTGCCAGGAGGAGCAGCACACCAGAAAGGAGAAGGAGAAGAAACCCGAGCCCAGCATCAGCGCTGNAGGACCGATCCGAAACGACTTCATCCAAGTTGTCGTCTTCTTCTTCTTCTTCCCGTTCATCCAAACTAAGCCCCTCAGCCTCTGCTACTCTCCTCGACGACGACCCCACCTCCCTCTTTGACGAATACACTAACCCTAACCCTAACCCTCGAAGCTTCCCACACAGTGTCAAACAGCAATGCTGGGAAAAAGCCGACAAGGTCAAAGGACGAGACCCCGCTCGNTGGCGCAGGGACCCCCTCGGCAACATCCTCTTTCGCAAGCTCGTAGGTTGCCCTGGCTGNCTCTGTCATGACTACGACCACATCCTCCCTTACTCTAAGGGAGGGNAAAGCACGCTGGAAAACTGTCAAGTATTACAGGCAACAGTCAATCGATCAAAGGGTAATCGAACAGAGATCTCCAAAGCTGAACTTATTCAGAAGAGTTCTTATTGCAGGGTTTCAGACCGTGATATGGATCTTCTGGAACTGTCGGCCTATGGCAATGTTCGGCGTGGACCAGATACTGGNGGATGTAGAATTCAATGAACATTTTTATCTATATTAATTTATTGAGTGGTTGATTCCAAGATGGGGATTGAATGGTGACAGTTTTTGGGGCTCCTTTTGTGCAACTGCAAAGAAAAGTGATGACATTGTGATCTCTGAAGTTGATGTTTTCAAGTGTAGCTATGCTTATTCTCTCTTTCCCTGAAACTCTACGATCTTCTCTCGAGCAGCGGTGATTTGGAAGGCGAGTTAGGGTACTTTTTCTTTTTTCATATCCTTCATAGTTCACCCCATAATATCATAGCAAGTAGCAACACCCCNCTCTCTTTGTGAGTGCGTGTGTCCAGGAGTAACTCTTTCTGAAACTTACCCCAACGATTCTATTATGATTGTAATGTCAAGAATTAAATGGTGCCTGGATTTTCTTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00596	76643	79258	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004519 endonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000596s00021318.1	PF01844.18	HNH	126	162	5.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.740
SRR1783600	control	27.689
SRR1783602	moderate drought stress	28.181
SRR1811619	moderate drought stress	28.085

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.580
DRR006520	Root Summer glycyrrhizin high producing strain	16.174
DRR006521	Root Winter glycyrrhizin high producing strain	13.145
DRR006522	Root Winter glycyrrhizin high producing strain	12.704
DRR006523	Root Summer glycyrrhizin low producing strain	18.404
DRR006524	Root Summer glycyrrhizin low producing strain	17.831
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.552
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.507
SRR2868004	Drought Stress (root)	26.637
SRR2967015	Control (root)	28.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.233
SRR9715740	Leaf	98.110
SRR9715741	Leaf	55.423
SRR9715739	Root	13.931
SRR9715742	Root	15.645
SRR9715743	Root	16.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.076
SRR8749028	MeJA induced 9h	16.133
SRR8749029	MeJA induced 9h	22.403
SRR8749030	Uninduced	21.318
SRR8749031	Uninduced	13.879
SRR8749032	Uninduced	17.402

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.138
SRR8400027	Control - Root	22.105