Gene detail

Gene detail information of Glyur000596s00021316

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18750.1	6.00E-83	AGAMOUS-like 65
NR	XP_007155298.1	0	hypothetical protein PHAVU_003G189100g, partial [Phaseolus vulgaris]
Swissprot	tr\|Q9XGJ4\|GGM13_GNEGN	9.00E-18	MADS-box protein GGM13
trEMBL	tr\|V7CAT1\|V7CAT1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27292.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000596s00021316.1
ACGAACAAATAAAAAAAAGCCTAAAAAATNAAGAATGAAACAAAGGTGACATAGCATAAAATAAAAGAATGGCAGCAATGCAAGTATGTCATGGAAGGAAAATAGTGTCCTGTTTCGGACGTGGACACAGAGTAAAACGTGGCATACAGAAGCTGAATTGCTGAATGGAAGAGAGAGAGANAAGAGGGAGGGTTTGTTTTGTGTTTGTTTGTTGGTAGAGAAGGTGTTTGTTGCAAACGGTGCCAACAACAATTGGGGTCTCAGAAATCTCACCGTCCGTTTTCAAAATTTTCAAAATTTCAGCTTGGCTGGTTCCCCAATCTCTATCACACCGAAATCACAGCTACACCCGTCGTCCTGCAACAATTTGTTAGCTTTCTCTNTCTCTCTCTCTCTCTCTACTCTGCATGTTTTCCCTGAAAGAAACATTGCATCATATCTTCTCTCAATTCTTCAGCTACCCCACACCCTCACCCTCCCCTGTTTTCAATATTTCCATTCACTTACCTTAATTCTTTTTCTACACATCGTCTTCAGTATCTCAACAAGGATGGGGAGAGTTAAACTGAAGATAAAGAAATTGGAGAGCATGAGCAACCGACACGTGACTTATTCGAAGCGGAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTATGTGATGTAGAAATTGTCCTTCTCATGTTTTCTCCAACAGGAAAGGCTACATTGCTACAGGGAGAGCGCAGCACTATTGAGGAGATCATTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCATTGAAGAAAACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCCTGGGTTCAAGTAGTCAAACTATGGAGGATTTAACTCATCAAGTGAGGGTTTTACAAGCTCAGATCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTGGAGAAGATCAATAACTTAGAACATCTTAGGCAAATGGAAGAGTCACTCAGGGAATCAATCAATCGAGTGTGTCTACAGAAGGAAAATTTAGGAAAGCGTCAACTAGTTTCGCTTGAATGTGCTAGCCAGTTACAGGAAGGGATGACTTTACCCATGATGATGGCTGGTCTGCAAGAATCCCAACCCCTATCTTGGCTTTTGAATGGTGATAATCATCAGTTAATGTTACCTAGTGAACCAAAATTTCTGCCATTTAGCGATAATACCAATAGAGACGCCGAGTGCTCCACTGACATTTCACTCCCANGCTATTCTGGTTATATTGGGAGTAGCAAACTTGAGGTTGGCAGCTCTCCCCAGGACACTACTTTGGGTCAGGGAGGTGGTTCCTTGAACGAGTTAAATGGAAATCCTTACTTAAATGTACAACAACATTGTGAGCAGCAGTTTGCATACCCTCCTCCACCAGATATTGAGGATGTGAAACCTCACCCAACAATGAACACTGTTAACAACAGTAAATCGAACACCGTGGATTACCAAGTTAATAACAGTTTTGATCTTCCCAGATCACTGTTTGAAAATGGACATCAGTTCTGGAATTCTGCTCCTGGGTCTTGTGGGATTGCCATGTATAATGAGAATGGTTACCCTAGGATTTTTGGAGTTGGGTCAGTGATCCAAGCTGTAAATTTGAATTTTGTAGAAAATGAAGTTTACATACTGTTTGACTCAAGTGCAGTGTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00596	69890	74781	-

Gene family

Gene family	subfamily
Transcription Factors Family	M-type

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000596s00021316.1	PF00319.13	SRF-TF	165	208	3.70E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.507
SRR1783600	control	2.920
SRR1783602	moderate drought stress	4.015
SRR1811619	moderate drought stress	4.139

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.560
DRR006520	Root Summer glycyrrhizin high producing strain	4.338
DRR006521	Root Winter glycyrrhizin high producing strain	2.446
DRR006522	Root Winter glycyrrhizin high producing strain	2.371
DRR006523	Root Summer glycyrrhizin low producing strain	2.787
DRR006524	Root Summer glycyrrhizin low producing strain	2.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.588
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.411

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.291
SRR2868004	Drought Stress (root)	4.161
SRR2967015	Control (root)	5.270

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.928
SRR9715740	Leaf	2.491
SRR9715741	Leaf	2.520
SRR9715739	Root	0.233
SRR9715742	Root	1.477
SRR9715743	Root	1.051

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.336
SRR8749028	MeJA induced 9h	0.449
SRR8749029	MeJA induced 9h	0.331
SRR8749030	Uninduced	0.385
SRR8749031	Uninduced	0.852
SRR8749032	Uninduced	0.449

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.160
SRR8400027	Control - Root	5.538