Gene detail

Gene detail information of Glyur000596s00021315

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47470.1	6.00E-121	light-harvesting chlorophyll-protein complex I subunit A4
NR	XP_004513901.1	1.88E-159	PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9SQL2\|CB24_PEA	4.00E-154	Chlorophyll a-b binding protein P4, chloroplastic (Precursor)
trEMBL	tr\|M5WBL1\|M5WBL1_PRUPE	7.00E-159	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10696.1}

Sequence

Transcript Sequence

>Glyur000596s00021315.1
TCCGATCCCAGATTGCCACACACAAGTCACAAGAACCACAAGAATTCCTACAAAGGGAAATACAAATGAAGCCATGTGCAGAAAGCTAACTCATTTTCATGTTGTTCTACTTCTACCACTGCCAACCACACTTCCTATCCTAGTCCTAGTTCCTACTAAACATGGCTACACATGCTTCTGCCACCCTTTCCCGGCCATGTGCCCCAAAATCAAGGTTCCTCACTGGCTCTTCTACTAAACTAAACAGGGAAGTGGCTGTTAGTGTTAGACCAATGGGGTCTCCTTCATTTACCTCTTTCAAGGTTCGTGCCAAGAAAGGAGAGTGGTTACCAGGCTTGGCCTCCCCATCTTACCTCAATGGCAGTCTTCCTGGTGACAATGGATTTGATCCCCTGGGGCTTGCTGAGGACCCAGAGAACTTGAGGTGGTTTGTTCAAGCTGAGCTTGTCAATGGACGTTGGGCTATGTTGGGTGTCGCNGGAATGTTGCTGCCTGAAGTCTTCACCAAAATGGGTGTCCTCAATGTCCCCAAATGGTATGATGCTGGGAAAGAGGAATACTTTGCATCATCCTCAACCCTCTTTGTGATTGAGTTCATTTTGTTCCATTACGTGGAAATCAGAAGATGGCAGGACATTAAGAACCCCGGAAGTGTCAACCAAGACCCCATCTTCAAGCAATACAGTTTACCCCCAAATGAGGTTGGATACCCTGGTGGCATTTTTAACCCATTGAATTTCGCACCCACCCTGNAGGCTAAAGAGAAGGAAATTGCCAATGGGAGACTGGCAATGTTGGCATTCTTGGGATTTCTGGTTCAGCACAACGTTACAGGCAAAGGACCATTTGACAACCTCTTGCAGCATCTATCAGATCCATGGCACAGCACCATTATCCAAACACTAAGTNGAAATTAAATTTGTAACCGACTTGTGTTGTTATTTTGTAATCCTGAGTTGATGAATTTTGAAAGGTTTATGCGTGATTGTAAAGAACCAACTATTTCCATGTACAGAGGAACTACGGTGGTTTTATTTTGTTTTTGAGATTCAAGTCCATTGCTTAGCAATTGACACATTTTATTTNTTACTTCAAGAAACAGTTTTCTAAGACACTGCACTTGAGTCAAACAGTATGTAAACTTCATTTTCTACAAAATTCAAATTTACAGCTTGGATCACTGACCCAACTCCAAAAATCTACCAGTAAACAAGTCAGTCAAGGCAACAAAATATTTGATATGGACAAACTATATCCTATAAGTGATACAATATATACAGCTAACACAGCGCCCTCTCTCACAAGTGACGTCGACCTCACAGGTGGAGAGGCAACCTAATCTGGTTCTTGTGGAGATAATTTGAAAGCAATGGTCACGTCCTTTCAGTTGACATCCGCAATTGAAGAAGTTAGCATGGCTGGTTGAGCCAATCTTTTACTGCAAAATACAGGAAATTATAAACCAACCAAAGCCAACTTGTTTACAAGATNACTAGAGATGAAAATGCCAACATAAATAATTGGAACATGGTGAATATCTCCTGTTCAAGTGCTCCCAGACCCCTTTCAAGGCAAATTTAGCAAATCTACCCAGTGCAATGAAGTTACTAATGAAACATAATAGAACTGCTTACCCTAGGGTAACCATTCTCATTATACATGGCAATCCCACAAGACCCAGGAGCAGAATTCCAGAACTGATGTCCATTTTCAAACAGTGATCTGGGAAGATCAAAACTGTTATTAACTTGGTAATCCACGGTGTTCGATTTACTGTTGTTAACAGTGTTCATTGTTGGGTGAGGTTTCACATCCTCAATATCTGGTGGAGGAGGGTATGCAAACTGCTGCTCACAATGTTGTTGTACATTTAAGTAAGGATTTCCATTTAACTCGTTCAAGGAACCACCTCCCTGACCCAAAGTAGTGTCCTGGGGAGAGCTGCCAACCTCAAGTTTGCTACTCCCAATATAACCAGAATAGCNTGGGAGTGAAATGTCAGTGGAGCACTCGGCGTCTCTATTGGTATTATCGCTGTATGTTATAGAATAGAATTGAGTCAGTAAATAGATTGCGAAATGAAACACGAGGCAACATGTTATAATTTTAGAATGATGTCAACTTCTGTTACCACAACATTATAACAAAGCTCTGTAGAATTAAGAATGCAGGTTTCATACAGCTGTTAACCCACCTAAATGGCAGAAATTTTGGTTCACTAGGTAACATTAACTGATGATTATCACCATTCAAAAGCCAAGATAGGGGTTGGGATTCTTGCAGACCAGCCATCATCATGGGTAAAGTCATCCCTTCCTGTAACTGTGAAGCAACATTATCCCAAATAAGATTATCCTGAAGAAAGGAACAAGAGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00596	68572	71160	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000596s00021315.1	PF00504.16	Chloroa_b-bind	62	221	1.20E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.986
SRR1783600	control	0.910
SRR1783602	moderate drought stress	1.369
SRR1811619	moderate drought stress	1.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.725
DRR006520	Root Summer glycyrrhizin high producing strain	1.483
DRR006521	Root Winter glycyrrhizin high producing strain	1.287
DRR006522	Root Winter glycyrrhizin high producing strain	1.208
DRR006523	Root Summer glycyrrhizin low producing strain	0.958
DRR006524	Root Summer glycyrrhizin low producing strain	0.844
DRR006525	Leaf Summer glycyrrhizin high producing strain	128.711
DRR006526	Leaf Summer glycyrrhizin high producing strain	127.942

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.963
SRR2868004	Drought Stress (root)	3.466
SRR2967015	Control (root)	1.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.224
SRR9715740	Leaf	45.042
SRR9715741	Leaf	28.185
SRR9715739	Root	0.184
SRR9715742	Root	0.600
SRR9715743	Root	0.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.686
SRR8749028	MeJA induced 9h	0.339
SRR8749029	MeJA induced 9h	0.469
SRR8749030	Uninduced	0.148
SRR8749031	Uninduced	0.331
SRR8749032	Uninduced	0.205

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.026
SRR8400027	Control - Root	1.704