Gene detail

Gene detail information of Glyur000596s00021309

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61430.1	1.00E-111	NAC domain containing protein 100
NR	XP_004508725.1	0	PREDICTED: NAC domain-containing protein 100-like [Cicer arietinum]
Swissprot	tr\|Q9FLJ2\|NC100_ARATH	1.00E-144	NAC domain-containing protein 100
trEMBL	tr\|A0A072URG4\|A0A072URG4_MEDTR	0	NAC transcription factor-like protein {ECO:0000313\|EMBL:KEH31941.1}

Sequence

Transcript Sequence

>Glyur000596s00021309.1
TTTCCCTGATTCTCATCTCTACCTTCCCCAATTCTCTCTCCCAATCTCCGTGGAATTGTTCTCTTTTAAACCTCATCCTCATCCTCAGTAACAGGTACTGTACTTATTGTCTCCATATAGCTTCTTCTGGTTTCATTAGTTAATTTCTGTGAAAAAGACTCCTCAGTCCTCNTTCCTCATTCCTGAGCCAAAGAGAATCATCAAAGCAGTTTCAATAGAGAACCCTTTGAGGTTTAAAGGGTTTTTAATTAGAGGTCTNAAGCTGAGGTTGACCCATTCGCTACTTGATCAAAGTTCCCATCTTTTGAATTGAGAAAGCAACGAGAGGAAAAGGCTTTCTTAATGGAAAACGTTTCATTCCCATGTAAGGAAGATGATCAGATGGATTTGCCACCTGGGTTTCGGTTTCACCCAACTGATGAAGAGCTTATAAGCCATTACCTCTACAAGAAGGTCATTGACACCAATTTCTCTGCCAGGGCCATTGGAGAGGTCGACCTCAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCTAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGCGTGAGGGACAGGAAATACCCAACGGGGTTGAGGACCAACAGAGCCACAGAAGCAGGGTACTGGAAGGCCACTGGGAAAGACAAGGAGATTTTCAAAGGGAAATCACTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGCAGAGCACCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAATACAGGCTCGAGGGTAAATTCTCTGTTCACAACCTCCCCAAAGCTGCAAAGAACGAGTGGGTTATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACCCATATTTCTGGAATAATGAGGTTGGAAGCTTTCGGGAATGAATTGGGTTCTTCTGCTCTACCACCCCTCACTGATTCTTCCTCATCACCTTCCATTGGCAAAACTGATTCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATACTGTTCAGAGAAACCAAGGAGGGATCTCTGATTCCTTCACCAACCCCATTTACGGGGTTTCCTCAAACAACCCATTAATACCACTTTCTTCTGCCTCATTGTACTCTACTCAAGGTGTTCAAGCTTCACCTAATTTGCCATTTCCAGGTTCTGTTTACGGTACTATGCAGCAGGACGAGGCCATGATCCTGAGAGCCTTGTATGAAAACAATGGTTTCAACTTCAAGGCTGAGAGGCAAAGGGTTAGTGTCTCGCAGGAAACGGATCTGACTACTGAGATGAACGCTGAAACCTCATCGGTGGTGTCGAATTTTGACATGGGTAGTAGGAGGCAATTTGACAATCAGAACCATCCACCTGCTTCTTCTGTTGCTGCTGTGGACCTTGATGTGTTGGTAAAGAAACCAATTTTAATTGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00596	40383	43783	-

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000596s00021309.1	PF02365.10	NAM	16	142	1.70E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.458
SRR1783600	control	1.498
SRR1783602	moderate drought stress	1.071
SRR1811619	moderate drought stress	0.983

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.330
DRR006520	Root Summer glycyrrhizin high producing strain	1.499
DRR006521	Root Winter glycyrrhizin high producing strain	6.054
DRR006522	Root Winter glycyrrhizin high producing strain	5.957
DRR006523	Root Summer glycyrrhizin low producing strain	4.396
DRR006524	Root Summer glycyrrhizin low producing strain	4.419
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.776
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.909

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.823
SRR2868004	Drought Stress (root)	54.684
SRR2967015	Control (root)	73.570

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.411
SRR9715740	Leaf	8.247
SRR9715741	Leaf	11.906
SRR9715739	Root	3.095
SRR9715742	Root	7.213
SRR9715743	Root	5.623

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.552
SRR8749028	MeJA induced 9h	59.783
SRR8749029	MeJA induced 9h	36.440
SRR8749030	Uninduced	50.153
SRR8749031	Uninduced	30.736
SRR8749032	Uninduced	24.221

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.272
SRR8400027	Control - Root	20.797