Gene detail

Gene detail information of Glyur000596s00021299.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein
NR	KEH31956.1	xyloglucan xylosyltransferase [Medicago truncatula]
Swissprot	tr\|Q9LF80\|GT3_ARATH	Putative glycosyltransferase 3
trEMBL	tr\|A0A072URH9\|A0A072URH9_MEDTR	Xyloglucan xylosyltransferase {ECO:0000313\|EMBL:KEH31956.1}

Sequence

Transcript Sequence

>Glyur000596s00021299.1
ATGGGGCAAGAGAACAACAACAACAACAACAACGGGTCAGTTCACAAGAGAAGCAGCAACGCGGGTTTACCCACCACGAACTCCACCAACAACAACAGAAACCGCCGTGGACGCCAGATCCAGAAGACGTTCAACAACGTGAAGATCACCATCCTCTGCGGCTTCGTCACCATCCTCGTCCTACGTGGCACCATCGGCGTCAACCTCGGTTCCTCCGACTCCGACGCCGTCAACCAGAACCTCATCGAGGAGACCAACCGCATCCTCGCCGAGATCCGATCCGATTCCGATCCCGACGGCGGCGGCGCCGACGACGCCCCTTTCAACCCCAACGCCACCTTCACCCTCGGCCCCAAGATCTCCGACTGGGACCGCGACCGCAGGTCCTGGCTCGATCAAAACCCTGAGTACCCTAACTTCATCAAAGGTAAAGCTCGAATCTTGCTCCTCACTGGGTCCCCACCGAAGCCCTGTGACAACCCCATCGGGGACCATTACTTGTTGAAGTCCATTAAGAACAAGATTGATTACTGTAGATTACATGGGATTGAAATAGTTTACAATATGGCTCATCTGGATATGGAGCTTGCTGGGTATTGGGCCAAATTGCCCATGATTAGGAGGTTGATGTTGTCACACCCTGAGGTGGAGTGGATTTGGTGGATGGATAGTGATGCCTTTTTCACTGATATGGTCTTTGAGCTTCCTTTGTCCAAGTATGATGACTACAATTTGGTTCTTCATGGATATCCTGATTTGTTGTTTGAGCAGAATTCTTGGATTGCTGTCAATACTGGGAGCTTTCTCTTTAGGAATTGTCAGTGGTCTTTGGATTTGCTTGATGATTGGGCTCCAATGGGTCCCAAGGGTCCCGTCCGCGAGGAGGCCGGGAAGGTCTTGACTGCTAACCTCAAGGGGAGGCCGGCGTTCGAAGCTGATGATCAGTCTGCATTGATATATTTGTTGCTGTCCAAGAAAGACAAGTGGATGGGTAAGGTGTTCCTTGAGAATTCGTACTACTTGCACGGTTACTGGGCTGGGTTGGTTGATCGGTACGAGGAGATGATTGAGAAGTATCATCCGGGGTTAGGGGATGAGAGGTGGCCGTTTGTGACGCATTTTGTCGGGTGTAAGCCCTGTGGAAGCTATGGAGATTATCCTGTTGAGAGGTGCCTCAGTAGCATGGAGAGGGCTTTCAATTTTGCTGATAATCAGGTGCTCAAGCTCTACGGGTTCAGGCATCGCGGTCTGTTGAGCCCTAAGATCAAGAGAATCAGAAATGAGACGGTTACTCCTTTGGAGTTTGTAGACCAGTTTGATATTCGAAGGCATTCTGCTTCTACAAAAAGCAGTGAATCAAAAAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00596	3645	5012	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT34

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016758 transferase activity, transferring hexosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000596s00021299.1	PF05637.7	Glyco_transf_34	144	382	1.60E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.458
SRR1783600	control	25.903
SRR1783602	moderate drought stress	23.296
SRR1811619	moderate drought stress	23.738

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	91.630
DRR006520	Root Summer glycyrrhizin high producing strain	90.337
DRR006521	Root Winter glycyrrhizin high producing strain	11.900
DRR006522	Root Winter glycyrrhizin high producing strain	11.254
DRR006523	Root Summer glycyrrhizin low producing strain	185.718
DRR006524	Root Summer glycyrrhizin low producing strain	189.580
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.242
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.644

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.265
SRR2868004	Drought Stress (root)	60.868
SRR2967015	Control (root)	71.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.224
SRR9715740	Leaf	60.709
SRR9715741	Leaf	58.887
SRR9715739	Root	113.725
SRR9715742	Root	137.686
SRR9715743	Root	128.872

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.815
SRR8749028	MeJA induced 9h	82.824
SRR8749029	MeJA induced 9h	70.943
SRR8749030	Uninduced	99.049
SRR8749031	Uninduced	56.451
SRR8749032	Uninduced	79.963

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.373
SRR8400027	Control - Root	59.099