Gene detail

Gene detail information of Glyur000595s00018304

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G14850.1	nucleoporin 155
NR	XP_003530891.1	PREDICTED: nuclear pore complex protein Nup155-like [Glycine max]
Swissprot	tr\|F4HXV6\|NU155_ARATH	Nuclear pore complex protein NUP155 {ECO:0000303\|PubMed:12034489}
trEMBL	tr\|I1KQB7\|I1KQB7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G05070.1}

Sequence

Transcript Sequence

>Glyur000595s00018304.1
TGGCCCCCTTTAGTCGAGGTAGTGAATACCTGGGAGTTACCTCCTGTGCTCATTGAAAGATACAATGCAGCTGGTGGGGAAGGAACAGCTTTTTGTGGAATATTTCCTGAAATACGTAGGGCATGGGCATCAGTGGACAATTCCTTGTTTCTTTGGCGTTTTGATACGTGGGATGGCCAATGTCCTGAATACAGTGGGGAGGAACAAGCTATTTGTGCTGTTGGTCTTGCAAAATCAAAACCTGGTGTTTTTGTTGAAGCCATCCGATATCTTTTAATTTTAGCGACCCCTGTTGAGTTAATTTTAGTAGGAGTATGCTGCTCTGGAGGAGCAGATGGCTCAGATCCATTTGCAGAAGTTTCATTACAGCCATTGCCAGATTATACAATACCATCTGATGGGGTTACAATGACGTGTGTAGCTTGTACTGATAAGGGCCGCATTTTCCTTGCTGGACGTGATGGCCACATATACGAGCTTCTTTATTCAACTGGTTCAGGATGGCATAAGCGCTGCAGAAAAATCTGCATCACTGCTGGTCTAGGAAGTGTAATTTCCAGATGGGTCGTACCAAATGTATTCAATTTNGGAGCTGTTGACCCTATTGTTGAAATGGTTTTTGACAATGAGAGACAGATATTGTATGCACGAACTGAAGAGATGAAGCTTCAGGTTTATGTTCTTGGACCAAATGGTGGCGGGCAATTAAAGAAAGTGGCTGAAGAAAGGAATCTTGTCAATCAGAGGGATGCACATTATGGAGGTAGACAATCAGCAGGATCAAGAGCCTCAAGTCGATCACCAAAGCCATCTATTGTTTGCATCTCACCTTTATCTACACTTGAATCCAAATGGCTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACCTATCTACCTCTCCTTCTAGTGGAAGCCTAACTGGATTCAACACCAATCATCACAAGCCTAGCTGTTTAAAGGTTGTCACAACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGTGGTCTCACCTTTGGAACCATGGCTCTTGCTGGTAGACCTCAGAATGAGGATCTCTCACTGAAAGTTGAGGCAGCCTATTATTCTTCTGGAACCCTTATCCTTTCTGATGCATCACCTACAACTATGCCTTCACTCCTTGTTTTGAACAGGGATTCGAACACACAGTCATCACCATCAGGCAATATAGGTACAGGTACTAGGAGTTCTCGGGCATTACGGGAATCTGTATCTTCTTTACCAGTTGAAGGACGGATGCTTTCTGTGGCAGATGTTTTACCTTTGCCAGATACTGCAGCTACTGTGCAGTCTCTATATTCAGAAATTGAGTTTGGTGGTTATGAGGGCTCAATGGATTCGTGTGAAAGGGCATCTGGCAAACTCTGGGCAAGGGGAGACCTCTCAACCCAACATATATTGCCAAGGAGGAGGATTATCATCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCAATAGACATTCTAAGGCGACTATTAGAATCCAATTCTCCAAGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCCGGTGAGGCAGCTGCAATGTGTCTAATGCTAGCTGCGAGGATAGTGCATTCTGAAAACCTTATTAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGCATGCCACAACTTGAAGGTAGTAATGCATTATCAAACACGAGAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTTTTTTCAGGTGCACATGAAGGGCTCTGTTTGTGTTCATCTAGATTACTTTTTCCTCTNTGGGAGCTTCCTGTAATGGTTGTAAAAGGAAGTTTAGGTCCTTCAGGCACATTATCTGANAATGGGGTAGTTGTATGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACACAAACTCCGATCTTTAGAGAAATTCTTAAGATCTAGAAGGAACCAGAGGAGGGGACTTTATGGCTGCGTGGCAGGTTTAGGAGACTTGAGCGGTTCCATCCTATATGGTAATGGTTCTGCATTAGGTGCTGGTGATCGAAGTATGGTAAGAAACTTGTTTGGCGCATATTCCAGAAATATGGAGTCNAATGGTGGTGGAACTGCTAATAAAAGGCAAAGGTTGCCGTATAGTCCTGCGGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGTGAAGCCCTGTTTTTGCTTCAACTTCTTTCACAGCATCACGTCACTCGTTTGATTCAGGNATTTGATGCCAACCTTCAACAGGCCTTAGTTCAGTTAACATTTCATCAACTAGTTTGTTCTGAGGAGGGTGACCGTCTTGCTACAAGACTTATATCTGCTCTGATGGAGTATTATACTGGTCCTGATGGCAGGGGAACTGTAGATGACATTAGTAAGAGACTAAGAGAGGGTTGTCCGAGCTACTACAAGGAGTCTGATTACAAATTCTTCTTAGCTGTGGAAGCCCTGGAGAGAGCTGCTGTGACTGTAGATGCCGAGGAAAAGGAGAATCTTGCACGGGAGGCATTAAATTCCTTGAGCAAAGTTCCAGAGTCTGCAGACTTGCGTACTGTTTGCAAACGTTTTGAGGATTTAAGGTTTTATGAAGCTGTAGTGTGCTTACCTCTTCAAAAGGCACAGGCTCTTGACCCTGCAGGTGATGCTTATAATGATGAAATCGATGCAACTGCCAGAGAACAAGCACTTGCTCAGCGTGAGCAGTGTTATGAGATAATTATCAGTGCTTTGCGGTCTCTTAAAGGTGATGTCTTGCATAAGGAATTTGGCTCCCCCATCAGATCTGCTGCTTCACAATCTGCACTTGATCCAGCTTCTCGGAAAAAATATATAAGCCAAATTGTTCAGCTGGGTGTCCAATCACCTGACAGAATTTTCCATGAGTATCTTTACCAGGCTATGATTGATTTAGGTCTTGAGAATGAATTGTTAGAGTATGGAGGTCCTGACCTGTTACCATTTTTACAAAGTGCTGGTCGTAAACCCATACATGAGGTTCGTGCTGTGACTGCAACAACTTCTCCAATGGGGCAATCGGGAGCACCTATGTCGTCTAACCAAGTCAAGTACTATGAACTTTTGGCACGTTACTATGTCTTGAAGCGGCAACATATGCTTGCAGCTCATGCATTGTTAAGACTTGCTGAAAGGCGCTCCATTGATGGAGTTCCTACTCTTGAACAGAGATATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGAGAGGTTAAATTCAGGGGTTGAATCCGTAGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCTGAACCTGTATTGAACGCATATGATCAATTGTTATCAAATGGGGCTATTTTGACATCCCCAAATCTTAGATTACGTATGCTGAGATCAGTTCTAGTGGTACTTCGTGAGTGGGCTATGTCTGTATATTCTCAGAGGATGGGTACTAGTGCCTCAATACTAGGCGGAGGATTCTCATTGGAACGCACAGTTGCTAGTCAAGGAATTCGGGACAAGATCACAAGTGCCGCAAACAGGTATATGACTGAGGTGAGGAGGCTTGCCCTTCCACAGAGCCAAACAGAATTGGTTTACCGAGGNTTTAGAGAACTTGAAGAGTCGCTTATAAGTCCCCATTCATTTGATCGATTTTGATCTTTGTTGCAATATATAATGTTGTATCAATTGTTCTTGTCAAATAATTATTTTCAAATAAGAAGTTTCTAACTTTCC

Protein Sequence

>Glyur000595s00018304.1
WPPLVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDTWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIRYLLILATPVELILVGVCCSGGADGSDPFAEVSLQPLPDYTIPSDGVTMTCVACTDKGRIFLAGRDGHIYELLYSTGSGWHKRCRKICITAGLGSVISRWVVPNVFNXGAVDPIVEMVFDNERQILYARTEEMKLQVYVLGPNGGGQLKKVAEERNLVNQRDAHYGGRQSAGSRASSRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLTGFNTNHHKPSCLKVVTTRPAPPWGVSGGLTFGTMALAGRPQNEDLSLKVEAAYYSSGTLILSDASPTTMPSLLVLNRDSNTQSSPSGNIGTGTRSSRALRESVSSLPVEGRMLSVADVLPLPDTAATVQSLYSEIEFGGYEGSMDSCERASGKLWARGDLSTQHILPRRRIIIFSTMGMMEIVFNRPIDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSNALSNTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGSLGPSGTLSXNGVVVCRLSVGAMQVLEHKLRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSALGAGDRSMVRNLFGAYSRNMESNGGGTANKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQXFDANLQQALVQLTFHQLVCSEEGDRLATRLISALMEYYTGPDGRGTVDDISKRLREGCPSYYKESDYKFFLAVEALERAAVTVDAEEKENLAREALNSLSKVPESADLRTVCKRFEDLRFYEAVVCLPLQKAQALDPAGDAYNDEIDATAREQALAQREQCYEIIISALRSLKGDVLHKEFGSPIRSAASQSALDPASRKKYISQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRKPIHEVRAVTATTSPMGQSGAPMSSNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSIDGVPTLEQRYAWRCCTLPIILERLNSGVESVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILTSPNLRLRMLRSVLVVLREWAMSVYSQRMGTSASILGGGFSLERTVASQGIRDKITSAANRYMTEVRRLALPQSQTELVYRGFRELEESLISPHSFDRF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00595	62790	72756	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006913 nucleocytoplasmic transport

cellular_component
GO:0005643 nuclear pore

molecular_function
GO:0017056 structural constituent of nuclear pore

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000595s00018304.1	PF08801.6	Nucleoporin_N	4	490	6.80E-81
Glyur000595s00018304.1	PF03177.9	Nucleoporin_C	639	1093	2.30E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.909
SRR1783600	control	9.989
SRR1783602	moderate drought stress	22.641
SRR1811619	moderate drought stress	22.762

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.857
DRR006520	Root Summer glycyrrhizin high producing strain	11.014
DRR006521	Root Winter glycyrrhizin high producing strain	4.563
DRR006522	Root Winter glycyrrhizin high producing strain	4.422
DRR006523	Root Summer glycyrrhizin low producing strain	16.193
DRR006524	Root Summer glycyrrhizin low producing strain	16.383
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.432
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.396

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.653
SRR2868004	Drought Stress (root)	18.380
SRR2967015	Control (root)	18.876

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.131
SRR9715740	Leaf	6.829
SRR9715741	Leaf	4.523
SRR9715739	Root	7.894
SRR9715742	Root	19.718
SRR9715743	Root	16.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.121
SRR8749028	MeJA induced 9h	14.747
SRR8749029	MeJA induced 9h	8.206
SRR8749030	Uninduced	4.005
SRR8749031	Uninduced	2.583
SRR8749032	Uninduced	2.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.481
SRR8400027	Control - Root	19.335