Gene detail

Gene detail information of Glyur000595s00018303

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57490.1	2.00E-118	Ribosomal protein S5 family protein
NR	KEH21389.1	2.94E-164	40S ribosomal protein S2-4 [Medicago truncatula]
COG	YP_001013495.1	2.00E-59	30S ribosomal protein S5P [Hyperthermus butylicus DSM 5456]
Swissprot	tr\|Q9SCM3\|RS24_ARATH	3.00E-148	40S ribosomal protein S2-4
trEMBL	tr\|A0A072TV74\|A0A072TV74_MEDTR	1.00E-164	40S ribosomal protein S2-4 {ECO:0000313\|EMBL:KEH21389.1}

Sequence

Transcript Sequence

>Glyur000595s00018303.1
CNTATAAATAACACCAGAAACCCTAAACTGAACCCATTCTTCTCTATTCTCGAGAGCAGTTACTCTTTCCTCGCCGTTCTCTCAACTCACTCACAAACTCATCCACAAAATGGCGGAACGTGGNGGCGGAGATCGCGGTGGCTTTGGTCGTGGCTTCGGCGGTCGCGGACGCGGCGGCGACAGGGGACGCGGTGGACGCCGTAGGGGACCGGGAAGGCGCGAAGAGGAGGAGAAGTGGGTTCCTGTGACGAAGCTTGGTCGTCTCGTGAAAGAGGGAAAGATCAGAAGCCTTGAGCAGATCTACCTCCACTCCCTCCCAATCAAGGAGCACCAAATCGTTGACAACTTGGTGGGTCCCTCACTCAAGGACGAGGTCATGAAGATCATGCCGGTCCAGAAACAGACACGTGCCGGTCAGCGAACCCGATTCAAGGCCTTCGTCGTCGTTGGTGACGGTAACGGCCACGTCGGACTCGGCGTTAAGTGCAGCAAGGAGGTTGCCACCGCTATTCGCGGCGCCATCATTCTTGCCAAGCTATCCGTTATTCCCGTTAGGAGGGGCTACTGGGGTAATAAGATCGGGAAGCCACACACCGTTCCCTGCAAGGTCACCGGAAAGTGCGGTTCCGTCACCGTCCGCATGGTCCCTGCCCCTCGTGGTTCCGGAATCGTTGCCGCTAGGGTTCCCAAGAAGGTCTTGCAGTTCGCCGGAATCGATGATGTCTTCACTTCCTCTAGGGGTTCCACCAAGACTCTTGGAAATTTCGTTAAGGCTACTTTTGAGTGTCTGCTGAAAACCTACGGTTTTCTAACCCCTGACTTCTGGAGGGAGACTCGTTTCTCCAAATCTCCATTCCAAGAGTTCACTGATCTATTGGCTAAGCCAACTGGAAAGGCCCTCATCCTGGAGGAGGAAAGGGTGGAGGCTTGAGGTTTCTTGCAGTTTTGGTGTCATGGGGTGTTCATGATCTTGTGCTTTGAGCATCCCAAGGAACTAGTAATTATATGTTTTGTTTGCGCATGTTGTTTCCTTCGGTATTCAGGGACGATTTATAGCTTCATGCATTTTGTTTTTATATTCTTCAAGTTTAGTGGATTGGATATTTACTGAGTTTTGAATACCAAAATTTTATTCTTATATCTTATATCTTGATCTTGATTTTCACTTGGCTGTCGTAACTAATGACAGGTGGCATAATTCAGAGAAAAGTAAGTGTGGTTCTTTGATAAAATGAACATCAGAATTCATAACAAGTATGTTGAAATTCATCAAATTGTTTCGTTGTTCTTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00595	57959	59746	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005840 ribosome

GO:0015935 small ribosomal subunit

molecular_function

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000595s00018303.1	PF00333.15	Ribosomal_S5	85	150	2.00E-29
Glyur000595s00018303.1	PF03719.10	Ribosomal_S5_C	167	233	5.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	144.582
SRR1783600	control	145.092
SRR1783602	moderate drought stress	104.613
SRR1811619	moderate drought stress	104.474

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	244.774
DRR006520	Root Summer glycyrrhizin high producing strain	243.038
DRR006521	Root Winter glycyrrhizin high producing strain	91.757
DRR006522	Root Winter glycyrrhizin high producing strain	89.319
DRR006523	Root Summer glycyrrhizin low producing strain	154.407
DRR006524	Root Summer glycyrrhizin low producing strain	153.502
DRR006525	Leaf Summer glycyrrhizin high producing strain	63.675
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.263

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	422.132
SRR2868004	Drought Stress (root)	253.399
SRR2967015	Control (root)	234.751

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	197.824
SRR9715740	Leaf	179.143
SRR9715741	Leaf	165.833
SRR9715739	Root	649.218
SRR9715742	Root	397.106
SRR9715743	Root	424.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	502.769
SRR8749028	MeJA induced 9h	158.398
SRR8749029	MeJA induced 9h	230.340
SRR8749030	Uninduced	34.956
SRR8749031	Uninduced	15.435
SRR8749032	Uninduced	65.865

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	312.060
SRR8400027	Control - Root	286.435