Gene detail

Gene detail information of Glyur000595s00018300.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G44020.1	Mitochondrial transcription termination factor family protein
NR	XP_003530919.1	PREDICTED: uncharacterized protein LOC100809590 [Glycine max]
trEMBL	tr\|I1KQC1\|I1KQC1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G05110.1}

Sequence

Transcript Sequence

>Glyur000595s00018300.1
ATGCCATCGGTGACATGGGGCGTGATTCAGGGTCGCAAAGAGAAGCTCGTTTCGCGTGTAATCATCTTCGACTACCTCAAGGGTTTAGGAATCGTCCCCGACGAGTTACACGACTTGGAGCTTCCCTCCACCGTTGAAGTCATGCGTGAGCGCGTTGAGTTTCTCCAAAAACTGGGTCTTACCGTTGATGACATCAACGAGTACCCTCTTATGCTGGGTTGTAGTGTGAGAAAAAACATGATCCCCGTGTTGGGTTACTTGGAGAAAATTGGGATTGCAAGACCCAAGCTTGGAGAGTTCGTTAAGAGTTANCCACAGGTTTTGCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGTTCCTTAGAGGGCTTGATGTTGAAAAAGGGGATATTGGGTATGTGTTGCAGAAGTACCCTGAGCTTCTTGGGTTCAAGCTTGAGGGTACTATGAGTACTTCAGTGGCTTATCTTGTTAGTATTGGTGTTAACCCTAGAGATATTGGCCCAATGGTTACTCAGTATCCTTATTTCTTGGGTATGAGAGTTGGAACCATGATAAAGCCTTTAATTGAATACTTGGTAAGTTTGGGGCTACCAAAGAAGATTTTGGCTAGGATGTTGGAGAAACGAGCTTATATGCTTGGGTATGATCTTGAGGAGACTGTGAAACCAAATGTAGATTGTTTGATCAGTTTTGGTGTGAGGAAGGAGTGTCTGCCTTCGGTTATTGCTCAGTTTCCGCAGATTCTTGGGCTCCCGCTTAAGGCGAAGCTGTCTTCGCAGCAGTACTTTTTCAGCTTGAAGCTTAAGGTTGAACCTGAAGGGTTTGCAAGGGTGGTNGAGAAGATGCCACAGGTGGTTAGCCTTCACCAACAAGTGATCATGAAGCCGGTCGAGTTTTTGCTCGGTAGGGGGATACCGGCGCGGGACGTGGCTGGTATGGTGATCAAATGTCCTCAGTTGGTTGCCCTGCGAGTTGAGCTCATGAAGAACAGCTATTTCTTCTTCAAGAGTGAGATGGGGAGACCCATAGAAGAGCTTGTGGGGTTCCCAGAGTACTTTACTTATAGTTTGGAGTCAAGGATTAAGCCCAGATACCAGAGGCTGAAGAGCAAGGGGATAAGGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGGTTGCAGGGTAATTATATTGAGACTGAGAGTGTAGGTCCTTCATTCTGTATGGGTGGGAGATTAGAGCTACCAGGGAATGCGATTGTGTCAGATGAGGAAGAGGAGAGTGATGATGAAATACTATACAGACGAACTGTTTCCCTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00595	47467	48795	+

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000595s00018300.1	PF02536.9	mTERF	47	392	4.70E-113

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.521
SRR1783600	control	13.654
SRR1783602	moderate drought stress	18.533
SRR1811619	moderate drought stress	18.342

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.464
DRR006520	Root Summer glycyrrhizin high producing strain	16.172
DRR006521	Root Winter glycyrrhizin high producing strain	7.513
DRR006522	Root Winter glycyrrhizin high producing strain	7.273
DRR006523	Root Summer glycyrrhizin low producing strain	13.406
DRR006524	Root Summer glycyrrhizin low producing strain	13.176
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.870
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.799

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.463
SRR2868004	Drought Stress (root)	12.934
SRR2967015	Control (root)	11.169

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.488
SRR9715740	Leaf	7.291
SRR9715741	Leaf	6.730
SRR9715739	Root	13.072
SRR9715742	Root	9.704
SRR9715743	Root	10.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.977
SRR8749028	MeJA induced 9h	6.038
SRR8749029	MeJA induced 9h	4.572
SRR8749030	Uninduced	7.466
SRR8749031	Uninduced	2.758
SRR8749032	Uninduced	3.500

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.856
SRR8400027	Control - Root	11.709