Gene detail

Gene detail information of Glyur000595s00018299

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G14830.1	DYNAMIN-like 1C
NR	XP_004503345.1	PREDICTED: dynamin-related protein 1C-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8LF21\|DRP1C_ARATH	Dynamin-related protein 1C
trEMBL	tr\|G7LBF4\|G7LBF4_MEDTR	Dynamin-like protein 1E {ECO:0000313\|EMBL:AET05441.1}

Sequence

Transcript Sequence

>Glyur000595s00018299.1
ATGGCTACGATGACGAGCTTGATCGGGCTTATCAATAAGATCCAACGAGCCTGCACCGTGTTGGGAGATCACGGTGGCGAGGGTTTATCCCTCTGGGAGGCTCTTCCCTCCGTCGCTGTTGTCGGAGGACAGAGTTCGGGGAAATCCTCAGTGTTGGAAAGTGTGGTCGGAAGGGATTTTCTCCCTCGTGGATCTGGTATTGTTACTCGGAGACCGCTAGTGCTNCAGCTTCACAAGACCGAGAATGGCCAAGAATATGCTGAGTTTCTTCACATACCGAGAAAGAGATTCACCGACTTCGCTGCTGTGAGGAAGGAAATAGCAGATGAAACAGATCGTATAACTGGGAAGTCAAAGCAAATTTCAAACATTCCTATTCACCTCAGCATTTATTCTCCAAATGTTGTAAACTTAACCCTCATAGATCTTCCTGGGTTGACGAAGGTTGCAGTAGAGGGACAACCAGAGAGTATTGTTCAAGATATTGAAAGCATGGTCCGTTCATATGTTGAGAAGCCAAACTGCATTATCTTAGCTATCTCTCCTGCCAATCAAGATATTGCCACTTCAGATGCCATAAAAATTGCCAGAGAAGTTGATCCTTCAGGTGAAAGAACATTTGGAGTGGTTACAAAACTTGATCTTATGGATAAAGGAACCAATGCGGTTGAAGTTCTCGAGGGAAGGCAATACAGACTGCAGCATCCATGGGTTGGAATTGTGAACCGTTCACAAGCTGATATTAATAAAAATGTTGATATGATTGCTGCTCGTAGGAAGGAGCGTGAATATTTTGAGACAAGTCCTGAATATGGACATTTGGCACATAAAATGGGCTCAGAATATCTTGCTAAGCTTCTATCTCAGCATTTGGAGCAAGTTATCAGGCAGAAGATACCTAGTATCATTGCCTTAATAAACAAGACCATTGATGAGCTTAACGCAGAGTTGGACCGCATTGGCAGGCCGATCGCTGTGGACTCAGGGGTTAGAACTGAAATCTATGCTGAAATCAATATTCTTAAATTTGAAATTGTACTAAGTTCTGTTAATTANGCCCAACTATACACTATTTTAGAGATGTGTCGTGCATTTGACAAAGTATTTAAGGAACACCTGGATGGAGGACGTCCTGGTGGGGACCGGATATATGGAGTTTTTGATCACCAATTACCGGCTGCTTTAAAAAAGCTCCCCTTTGATCGCCATCTCGCCTTAAAAAATGTCCAAAGAGTTGTCACTGAGGCTGATGGGTATCAGCCCCATCTGATTGCTCCAGAGCAGGGTTATAGAAGACTCATTGAAGGGTCTATCGGCTATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTCCATTTTGTTTTAAAGGAACTTGTACGAAAGTCAATTGCAGAAACTGAGGAATTAAAAAGATTTCCAACACTTCAAAGTGATATAGCAACCGCTGCAAATGATGCTTTGGAAAGATTCCGAGATGAAAGCAGGAAGACAGTTTTACGGTTGGTTGATATGGAGTCTAGCTATCTAACAGTGGAATTTTTTAGGAAGATTCATCTTGAACCTGAAAAGAATCCAAATGGACCACCAAAATCAAATCGGAATGCTCCCCCCAATATGGACAATTATACCGACAATCACCTCAGCAAGATTGGATCAAATGTAAATGCCTATATCAACATGGTCTGCGATACGCTTAAGAATACTATACCAAAGGCTGTTGTTTATTGCCAAGTTAGAGAGGCTAAGAGGTCATTGTTAAACCACTTTTACGTTCAAGTTGGGAAGAAGGAGAAGGAGAAATTGGGCGCCATGTTGGATGAAGACCCAGCCCTAATGGAAAAGAGAGCCCAATTAGCTAAAAGGCTTGAATTGTACAAGCAAGCTAGGGATGATATTGACTCCGTGGCTTGGAAATAAAGAAGATCACTGATGTTGCAACAGATACCGTGAGGAAGATTTGTCATAGATTTTATGATTCTTATTATTTTTCTAATCAAACTGAAACAGAAAAGTGTACGTTACGACAAGAAATTGGTTTGCANTTGCATATAATTCTTTTGCCCCAGTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00595	40195	45929	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000595s00018299.1	PF00350.18	Dynamin_N	38	213	1.50E-53
Glyur000595s00018299.1	PF01031.15	Dynamin_M	222	333	1.10E-34
Glyur000595s00018299.1	PF01031.15	Dynamin_M	352	512	4.60E-29
Glyur000595s00018299.1	PF02212.13	GED	545	636	2.50E-22
Glyur000595s00018299.2	PF00350.18	Dynamin_N	38	213	1.40E-53
Glyur000595s00018299.2	PF01031.15	Dynamin_M	222	489	5.50E-71
Glyur000595s00018299.2	PF02212.13	GED	522	613	2.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.772
SRR1783600	control	38.797
SRR1783602	moderate drought stress	18.496
SRR1811619	moderate drought stress	18.252

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.460
DRR006520	Root Summer glycyrrhizin high producing strain	40.796
DRR006521	Root Winter glycyrrhizin high producing strain	3.754
DRR006522	Root Winter glycyrrhizin high producing strain	3.575
DRR006523	Root Summer glycyrrhizin low producing strain	16.982
DRR006524	Root Summer glycyrrhizin low producing strain	16.741
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.003
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	95.544
SRR2868004	Drought Stress (root)	55.499
SRR2967015	Control (root)	56.654

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.641
SRR9715740	Leaf	11.152
SRR9715741	Leaf	10.922
SRR9715739	Root	4.144
SRR9715742	Root	16.725
SRR9715743	Root	16.379

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.430
SRR8749028	MeJA induced 9h	29.022
SRR8749029	MeJA induced 9h	32.680
SRR8749030	Uninduced	2.643
SRR8749031	Uninduced	2.093
SRR8749032	Uninduced	2.856

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.784
SRR8400027	Control - Root	69.061