Gene detail

Gene detail information of Glyur000595s00018298

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68050.1	0	flavin-binding, kelch repeat, f box 1
NR	NP_001235886.1	0	circadian clock-associated FKF1 [Glycine max]
COG	YP_325987.1	1.00E-21	bacterio-opsin activator [Natronomonas pharaonis DSM 2160]
Swissprot	tr\|Q9C9W9\|ADO3_ARATH	0	Adagio protein 3
trEMBL	tr\|B9MST1\|B9MST1_SOYBN	0	Circadian clock-associated FKF1 {ECO:0000313\|EMBL:ABD28287.1}

Sequence

Transcript Sequence

>Glyur000595s00018298.1
GCCCCGGGAAGCCACAATCACAAAAATATCTCGCTCCCATCCCATCCCATCCCGGGTGATGACGTGGTGATAATTCACTTCCAGATATTTTCTCTCTTATCAAAAATATCAACCCATCAACGGCATACGTAGCAGGTGNAGTGTTTACACCCTTCCAATCCACCCTTCATTTTCCCCTCAAACTACAAAACTGCCACCACTCTCATTATCCACAAGGTTCCCTCGCAATTTATCCTTGTAAGAAGGGCATTTCTGTAACTATACTCCAGCATCCATATTATAGTATAGTATTGTCCGCAAACAGAAACAGAAACAGAAACAGAAACAGAGAGAGGAAGAGAAGAGAGATATTTGTTGTTGTTGTTGTTGTGATTGGAATTGGAATTGGAATTGGAATTTTAGATATGGCGATGGCAAAAGGGAAAAAGGAAGATGAAGAGCACAACCAGAACAGTGGGAAGAGGTTGAAATGCATGAAGAACAACATGAAGAGGAATGAGAAAGGGAGAGTTTTTCAGGGAGAGGATGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAGGAAAGTGAGCTTCCACTGAAACCAGGGGTGTTCTTCTACCCAACAACACCAACCTCGTTCGTTGTCTCAGATGCACTTGAATCCGATTTCCCAATCATTTATGTCAACAAGGTCTTTGAAATCTCCACTGGCTACCGTGCTGACGAGGCCCTCGGTCGCAACTGCCGGTTCTTACAGTATAGGGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGACTGAGACTTGCACCCATTCACGACGATGATGGAACCGTGACACACGTAATAGGTATCCAAATATTTTCCGAGGCAAATATAGATCTGAACCGTGTCTCGTATCCGGTTTTCAGAGAGACTTACAGTCAAGATTTCGATAAAAGTGGTAAATATTCTCCCAAGAGTGGGAAGTCATTGTACAGTCAGCACCAAGAGATGTGTAGCATTCTTCAGCTTTCTGATGAAGTCTTGGCACACAACATTCTGTCACGCTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTTTGCAGGAGGATCCGTCAATTAACAAAGAATGAGCATGTAAGGAAGATGGTATGCCAAAACGCGTGGGGCAAAGAAGTGACAGGTACATTGGAACTCATGACCAAGAAGTTAGGATGGGGTCGTCTGACCCGGGAACTCACTACCCTTGAGGCTGTTTGCTGGAGAAAAGTGACAGTTGGAGGTGCAGTTGAGCCTTCNCGCTGCAATTTCAGTGCCTGTGCTGCAGGAAACCGGCTTGTGTTGTTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTAAATCTCGATGCTAGAAACCCGGAATGGCAGAGGGTTAGCGTGAAATCATCCCCGCCTGGAAGGTGGGGCCACACGCTCTCGTGCTTAAATGGTTCTTGGTTGGTGGTTTTCGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAGCAACCAACATGGAGGGAAGTCTGTGGCAGAACCCCGCCACTTCCTAGATCTTGGCACAGCTCTTGCACAATTGAAGGCTCCAAATTGGTTGTCTCCGGCGGTTGCACAGACGCCGGGGTGCTCCTCAGTGACACATATTTACTGGACCTCACAACAGATAATCCTACATGGAGAGAGATTCCAACTTCATGGGCTCCTCCGTCGCGATTGGGGCACTCTCTCTCGGTGTATGGGAGGACGAAAATCCTCATGTTCGGTGGACTCGCCAAGAGTGGACACTTGCGGCTACGATCCGGCGAGGCTTACACGATCGATTTGGAAGATGAACAACCACAATGGNGGCAACTAGAGTACAATGCATTCACTGGATTAGCAAGTCAAAATGCTGTTGTTCCTCCTCCTAGACTAGACCATGTTGCTGTGAGCATGCCTTGTGGGAGGATCATTGTGTTTGGAGGTTCCATTGCAGGACTTCACTCACCATCTCAGCTATTTCTGTTGGACCCTTCTGAGGAGAAACCATCATGGAGGATCCTTAATGTTCCAGGGTCACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACAAGGGTGTTGGTATTGGGTGGACATACTGGGGAGGAATGGATACTCAATGAGTTGCATGAGCTATGCTTGGCAAGTCGACAAGACTCTGACATGTGAAGAAAAAAAGAGACCAAACCCTCTTCTCTCAAGACAAGATTTTTGTTACAACAAAAAAAAAAAGTTTTCTTTTTGAGTTTTCATTCTGCCTTTAGCAGTTTGGTTTTGTTTATAAGCTGTTCTATGACTGTTGTTATATGGCATGTGTATGAGTACATATGTAACTATGTTATTACCAGGGTTTTTGAATGATTTGTACATCGGAGTTCTTGGCTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00595	35241	38683	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0004871 signal transducer activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000595s00018298.1	PF13426.1	PAS_9	74	179	2.70E-18
Glyur000595s00018298.1	PF00646.28	F-box	228	267	1.80E-05
Glyur000595s00018298.1	PF13418.1	Kelch_4	322	373	5.90E-12
Glyur000595s00018298.1	PF13415.1	Kelch_3	388	435	1.40E-11
Glyur000595s00018298.1	PF13415.1	Kelch_3	437	488	1.40E-09
Glyur000595s00018298.1	PF07646.10	Kelch_2	547	594	3.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.589
SRR1783600	control	5.611
SRR1783602	moderate drought stress	18.833
SRR1811619	moderate drought stress	18.762

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.195
DRR006520	Root Summer glycyrrhizin high producing strain	50.436
DRR006521	Root Winter glycyrrhizin high producing strain	132.658
DRR006522	Root Winter glycyrrhizin high producing strain	129.080
DRR006523	Root Summer glycyrrhizin low producing strain	57.434
DRR006524	Root Summer glycyrrhizin low producing strain	57.462
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.426
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.891

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.752
SRR2868004	Drought Stress (root)	3.822
SRR2967015	Control (root)	29.276

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.631
SRR9715740	Leaf	2.156
SRR9715741	Leaf	0.802
SRR9715739	Root	0.515
SRR9715742	Root	2.369
SRR9715743	Root	2.164

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.200
SRR8749028	MeJA induced 9h	31.963
SRR8749029	MeJA induced 9h	27.929
SRR8749030	Uninduced	3.551
SRR8749031	Uninduced	21.192
SRR8749032	Uninduced	22.730

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.057
SRR8400027	Control - Root	3.615