Gene detail

Gene detail information of Glyur000594s00025973.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05460.1	1.00E-59	RNI-like superfamily protein
NR	XP_007041114.1	0	F-box/LRR-repeat protein 23, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9M0U9\|SKI19_ARATH	4.00E-86	F-box protein SKIP19
trEMBL	tr\|A0A061DXY4\|A0A061DXY4_THECC	0	F-box/LRR-repeat protein 23, putative isoform 1 {ECO:0000313\|EMBL:EOX96946.1}

Sequence

Transcript Sequence

>Glyur000594s00025973.1
ATGTTAATTTGGGGGGAAATTTGGGGAGGAGAATGTGCTGAGCAGATCAAACATTTACGGCTTCCATATAATCGTACTGATGATTACCCATTCAAAGCTGAAGTTGATTATGGATCACTCGATGAAGCCTACCAATATGCGATCTCAGACAGAGATTTCTTGTCTGATGATGATTATTACCATTATCCATTCTCAGGCTGCTTCAATGGAACCGTCTTCGCCGAATTCGAAGGCAGTGCTCGCCGATTCGGGAGAACGAAACTGGCTGGATCTTCCACGAGACGTGGTGTCCACAATTTTCCTGAAGCTTGGCGCAATCGACACCATGATTCGCGCCCAGCGCGTGTGCACCGTGTGGCGCAACATCACGAAGGACCCTTTCCTGTGGCGCACCATCGACATGCGCTATACGGGGTTTTCGACCGCGGCTACGACAACGACTTAGAGATTCTGTGCCGCCGCATCGTTGACTACAGCGCCGGCAACTTGCTCGATATCAACATCGAGTATTTCGGCACCGATGATCTCCTCAATTACATCACTGACTCATCAATTTGTGAAATTGTGACCCTCTCACCGCAGTTAGTTCAAACTTCAATGGAGTCATCGTCGAATTCGAAGGCAATGCTAGCCGATTCGGGACAACGAAACTGGCTGGATCTTCCACGAGACGTGGTGTCGGCGATTTTCCTGAAGCTTGGCGCAGTTGAAACCCTGACGCGCGCTCAGCACGTGTGTTCCGTGTGGCGCAACATCTCGAGGGACCCTTTCTTGTGGCGCACCATCGACATGCCCGATTCGGAGGATCCCAGCACCGACTACTATTTCGAGATTCTGTGCCGCCGCGCCGTTGACTACAGTTCCGGCAACTTGGTCGATATCAATATCGAGCATTTCGGCACCGATGATCTCCTCCGTTACATCACNGACTCTACAAGTCATCTACGGCGGCTACGTCTTGCAGGTTGCTATAGCATATCAGATGAAGGATTGTGTGAAGTTGCAAATAAGCTCAATCAATTGGAGGAACTTGATATNTCCATCAGCAGCTTATCCAACGATCCTCTAGAAGCTATTGGCCGATGCTGNCCGCACTTGAAATCCTTGAAATTCAACATGAAAGGGTACAGACGTCCACACATTGAGTGTGANGAGGAAGTGATTTCTATTGCAAAAACCATGCCTGAGTTACGCCATCTCCAGCTTATCGGAAACAAGCTGACTAATAATGGGTTGCTTGCCATTCTTGATGGCTGTCCTCACCTTGAATCTCTTGACTTACGACAGTGTTTCAATGCTTCAATGGAGTCGTCGTCGGAGTCGTCGAATTCTAAGGCAGTGGAAGCCGATTCGGGAGAACGAAACTGGCTGGATCTTCCACGAGACGTGGTGTCCANGATTTTCCTGAAGCTTGGCGNAATCGATACCATGATTCGCGCCCAGCGCGTGTGCTCCGTGTGGCGCAACATCACGAAGGACCCTTTCCTGTGGCGCACCATCGACATGNACAATACGGGGGATTTCGACCGCGGCTACGACAACGACTTATTAGAGATTTTGTGCCGCCGCGTCGTTGACTACAGCTCCGGCAACTTGGTCGATNTCAACATCGAGTATTTCGGCACCGATGATCTCCTCCACTACATCACTNACTCTACAAGTCATCTACGACGTCTACGTCTTGTATGTTGCTATAGCATATCAGATGAAGGATTGTGTGAAGTTGCAAAAAAGCTTCCTCAGTTGGAGGAACTTGATATATCAATCAGCAGCTTATCCAAGGATCCGCTAGAAGCTATTGGCCGATGTTGTCCTCACTTGAAATCCTTGAAATTCAACATGGAAGGGTACAGACGTCCACATATTGAGTGTGATGAGGAGGCAATTGCCGTTGCAGAAACCATGCCTGAGTTACGCCATCTCCAGCTTTTCGGAAACAAGATGACTAATGTTGGCCTGCTTGCCATTCTTGATGGCTGTCCTCACCTTGAATCTCTTGACTTACGACAGTGTTTCAATGTTAATTTGGGGGGAAATTTGGGGAGGAGATGTGCTGAGCAGATCAAACATTTGCGGCTTCCAAATGATCCCACTGATGACTACCCATTTGAAGCTGAAGTTGATTATGGATCACTCGATGAAGACTACCCATCTGGGATCTCAGACATAGATTTCTTATCTGATGATGATTATGACGATTATAATTTCTCAGGTGGGAGTGAATTTTCTGACTATGATTATGATCATTATTATGACTTTTGACAAATATATGACAAATTTCAGCACGGGGAAAATATGCTGTTAATAACTTGGTTCCACTCCTTGATATTTCTCTGTACCATTGGGATCAAAAGAAAGTAGGGAAAGACTCGGCAATGCACTCCATTAAAGTATCCTGCACCCTCTAATGATACACAATGTAGTGATGCTGTTTTAATGAATTTGGTAGGTGGAGACTGCCTGACTGTCTGTTACATGGGCAGATAGCTGATAAAGTGATAATCATCTGGTGCCTTTGTGAAGCGCATTCACTGTTTGCACTTGTATTTACCTGATATATGTAAGAAGCACTTTCTTTGGCTTTATATTGGAAATATGTGACTTCTGAAAATCTTACTGTGATCTTCGGTTTTCTTTAGTTTTCGGTAAGTGCAGAGTACCTTTTTAATATGCATTCCCGGACTTGAGTTGGAGTAAAATAAGAGGATTAGCGTTTTGAAGAACTCATGGTAAAAGGTTCAGGGTGAGCTAATAGTCTAATACCATTAAGGGCAATTGCTTCGGTGTCAAGTTATGATCGCAGTATAGAAGTACATAGAATTTAGTTTTGTGTTGGGTATTCGCGTTTGGAACCCAAAGTTCTAGAGGTAATTATATCTCTAGTAATGATAAATATCAGAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00594	127403	139828	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000594s00025973.1	PF12937.2	F-box-like	218	263	5.80E-09
Glyur000594s00025973.1	PF12937.2	F-box-like	456	501	1.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.185
SRR1783600	control	14.092
SRR1783602	moderate drought stress	21.164
SRR1811619	moderate drought stress	20.729

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.231
DRR006520	Root Summer glycyrrhizin high producing strain	17.069
DRR006521	Root Winter glycyrrhizin high producing strain	23.634
DRR006522	Root Winter glycyrrhizin high producing strain	23.491
DRR006523	Root Summer glycyrrhizin low producing strain	17.725
DRR006524	Root Summer glycyrrhizin low producing strain	17.915
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.785
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.260
SRR2868004	Drought Stress (root)	15.193
SRR2967015	Control (root)	17.296

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.480
SRR9715740	Leaf	12.081
SRR9715741	Leaf	12.576
SRR9715739	Root	22.944
SRR9715742	Root	16.086
SRR9715743	Root	18.740

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.792
SRR8749028	MeJA induced 9h	18.914
SRR8749029	MeJA induced 9h	14.489
SRR8749030	Uninduced	10.543
SRR8749031	Uninduced	10.043
SRR8749032	Uninduced	12.676

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.865
SRR8400027	Control - Root	13.947