Gene detail

Gene detail information of Glyur000594s00025970

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34650.1	1.00E-155	Protein kinase superfamily protein
NR	XP_004485993.1	0	PREDICTED: protein kinase PINOID-like [Cicer arietinum]
COG	YP_593464.1	7.00E-20	serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|O64682\|PID_ARATH	0	Protein kinase PINOID
trEMBL	tr\|G7IP53\|G7IP53_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES64138.1}

Sequence

Transcript Sequence

>Glyur000594s00025970.1
CTGAACGAACAAACAGCAAGTTTTGATTCTCGTGGAACTTGTTTTCTATTCTTCTATGGTGGTTGTTGTTGTTCGACCATGTTAGAGAGTGGGCGTGATTCTGGGATGAGCTTGGACACCGTCAATTCCACCACGCAGCGAACATCCATGAGCAGCGGCGGAAGCGAGAGCATTTGCAGCACCAGCTTCAGCCGTCTCTCCTTCGAGCTCCTCCTCCCGGCGTCTTCCTCGCCGGAAAATACTCTCTCCATAAAGCCCCACCGCTCCTCCGATTTCGCCTACTCCGCCATCCGCTCCGCCACGTTCGGACGTAAGTCTGGCGGCCTCACCTTCCGCGACTTCCACCTCCTCCGCCGCATCGGCTCCGGCGACATCGGCACCGTCTACCTCTGCCGCCTCCGCGACGACGATGATGANCCTGCCTCGTGCTTCTACGCCATGAAGGTGGTTGACAAGGACGCCGTGGCACTCAAGAAGAAGTCACACAGGGCTGAGATGGAGAGGAAGATCCTCAAGATGCTCGACCACCCTTTCCTCCCTACGCTCTACGCCGAGTTTGAAGCCTCTCATTTCTCTTGCATTGTCATGGAGTACTGTTCCGGCGGNGACCTTCACTCCCTCCGCCACCGCCACCCTCATAACCGCTTTTCTCTCTCCACTGCTAGGTTTTACGCGGCTGAAGTACTGGTGGCGTTGGAGTACCTTCACATGCTGGGAATAATCTACAGGGATCTAAAGCCGGAAAACGTGTTGGTCAGATCGGACGGTCACATCATGCTCTCTGATTTCGATCTCTCCCTCTGCTCACACGCAATCCCAGTCGTTGAGTCCCCAGAGTGTTCCCCAGATCCTGCATTCCCACCCGCCTTCTCCTGCGCCCGCCCGCAACCAAACCCCACCCCGTTCGCGTGTCTCTCCAAGAGACTTTTCCGGTCCAGGAAGGTGCAGACTCTTCAGTCGAANCGGCTCTTCGTGGCCGAACCGGTTGCGGCCCGGTCTTGTTCGTTCGTCGGGACCCACGAGTACGTGTCGCCGGAGGTTGCCTCCGGGAACTCACACGGCAACGCCGTCGACTGGTGGTCCTTCGGGGTGTTCGTCTACGAGATGGTGTACGGTCGCACCCCTTTCGCGGGCCCATCGAACGAGGCGACGCTNCGCAACATCATAAAGAAGCCCCTCGCGTTCCCTACCGCCACGCCCTCCAGCACGCTTGAAATGCACGCGCGGGACCTCGTGTCACGGTTGCTGAACAAGGACCCGAACCGCAGGCTCGGGTCGAAGCGAGGNGCCGCTGACGTCAAGAAGCACCCGTTCTTCGCGGGGCTCAACCTGGCGCTCATACGGATGGTGACGCCGCCGGAGGTTCCCAGCCTCAGGAGGCACAAAACGACGCCGTTGTTCCCCGTCAAGGACAACAACGGCAACAGAAGTAGCAGTAGACAACAGCCCACGGCGTCGTTTGATTTCTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00594	114765	116645	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000594s00025970.1	PF00069.20	Pkinase	114	268	9.90E-36
Glyur000594s00025970.1	PF00069.20	Pkinase	332	439	1.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.936
SRR1783600	control	16.452
SRR1783602	moderate drought stress	10.959
SRR1811619	moderate drought stress	10.997

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.400
DRR006520	Root Summer glycyrrhizin high producing strain	9.661
DRR006521	Root Winter glycyrrhizin high producing strain	0.075
DRR006522	Root Winter glycyrrhizin high producing strain	0.073
DRR006523	Root Summer glycyrrhizin low producing strain	12.842
DRR006524	Root Summer glycyrrhizin low producing strain	12.577
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.899
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.490
SRR2868004	Drought Stress (root)	3.538
SRR2967015	Control (root)	4.415

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.997
SRR9715740	Leaf	0.353
SRR9715741	Leaf	0.754
SRR9715739	Root	67.376
SRR9715742	Root	26.058
SRR9715743	Root	34.025

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.718
SRR8749028	MeJA induced 9h	21.828
SRR8749029	MeJA induced 9h	7.529
SRR8749030	Uninduced	2.374
SRR8749031	Uninduced	0.287
SRR8749032	Uninduced	1.046

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.860
SRR8400027	Control - Root	6.392