Gene detail

Gene detail information of Glyur000594s00025967

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18390.2	2.00E-39	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
NR	XP_007147929.1	4.87E-146	hypothetical protein PHAVU_006G166600g [Phaseolus vulgaris]
Swissprot	tr\|Q93V43\|TCP2_ARATH	1.00E-75	Transcription factor TCP2
trEMBL	tr\|V7BSC3\|V7BSC3_PHAVU	2.00E-146	Uncharacterized protein {ECO:0000313\|EMBL:ESW19923.1}

Sequence

Transcript Sequence

>Glyur000594s00025967.1
ATGGAGGAGGATGAGATTGAAGCACAGGCANGTAAGTTCCCAAGAGTTGGAAATGGTAGAAACGAGTCAAACAACAAGATAGGTGGTTCCAGCAGAGGGAGTGAGCATCAGTTCCCAGATCATGAGGAAGAAGATCAGCTGAGAAGGAGAAATAATGGATGTGGAGGTAGTGATGGAAGCACAAACCATTTCCAAAGTAGTGGTTGGCACCACCACTCATCAAGAATCATAAGGGTATCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCAGTGACAACAGCTATTCAGTTCTATGACCTTCAAGATCGCCTTGGTTATGACCAACCCAGCAAAGCCGTTGAGTGGTTAATCAAAGCAGCTTCTGATGCCATCTCAGAGCTCCCTTCTCTCAACAACACATTCCCCGAAACCCCAAAGCAGCAACTTCTACAAGGCCTTGTTGATGAAGGAGAAGCAGATCATAATGGTGATGGGACCAATTACCAACANNACCAAAGCCAGAACCTTTCTCTGTCAAAGTCTGCTTGTAGCAGCACTTCTGAGACAAGCAAAGGCTCTGGCAGCTTGTCCCTCTCACGCTCTGAGATCCGTGTGAACCGAGAGAAGGCAAGGGAGAGAGCAAGAGAAAGAGCAGCAAAGGAGAAAGAGAAGGAGAAAGAGAAAGAGAAAGAGAAAGAGAACGATTCTAGCATTAATGCACATCACCACCACCACCACAACAACAACAATGTGAACCACCACAACCACATGTCCCAAACTGCTTCCTTCACTGAGCTACTCACTGGTGGGATTGGAAGCACAGTAACAGTTCCAACCACAACAACCACAAGCCCCAATGGGTCAGTTCATGATCAGATCCAAGGTGGTGGTGGTGATGAATTCAACAAGGCAAGGCATCAATGGTCTTCTTCAACAGTAACCCCAATGGACTACTTCACCTCAGGCCTTCTACAATCCTCTTCAAGAACAACCCATCAATTCAGTGGTGAAAACCACTCAGAACAGCTCCAGCAGCATTTCTCCTTCATGCCTGAACATTTTATACCACCACATATGGTTAATTCTTCTACTTCCTCTAATTCCTCTCAGCAGCAGCCAAGTGGGAGTAGTGACTACAATCTCAACTTCACCATCTCTTCAGGCCTTGCTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATATTTCTCCGTCTCTTTTGCCTCACATGCAGAGGTTTAATTCACCCTTAGACGGATCACCAGTAGTACCATCCAATCATCTACCTTTTTTCATAGGAGCTGCTCCTCCAGTACCAACCATGGACAACAACAACNACCACCACCACCACCACCTACAGTTCTCACCCGTCTTCGATGCCCGCTTGCAACTTTTCTATGGCGACGGAACCCGCCNTTCTGACCAGAAGGAAAAAGGCAAGAACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00594	61008	62480	-

Gene family

Gene family	subfamily
Transcription Factors Family	TCP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000594s00025967.1	PF03634.8	TCP	83	237	6.80E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.689
SRR1783600	control	4.817
SRR1783602	moderate drought stress	5.142
SRR1811619	moderate drought stress	4.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.147
DRR006520	Root Summer glycyrrhizin high producing strain	0.146
DRR006521	Root Winter glycyrrhizin high producing strain	8.536
DRR006522	Root Winter glycyrrhizin high producing strain	7.995
DRR006523	Root Summer glycyrrhizin low producing strain	0.450
DRR006524	Root Summer glycyrrhizin low producing strain	0.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	100.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	102.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.877
SRR2868004	Drought Stress (root)	17.601
SRR2967015	Control (root)	19.691

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.059
SRR9715740	Leaf	50.592
SRR9715741	Leaf	40.490
SRR9715739	Root	1.178
SRR9715742	Root	12.507
SRR9715743	Root	7.838

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.588
SRR8749028	MeJA induced 9h	14.425
SRR8749029	MeJA induced 9h	13.561
SRR8749030	Uninduced	7.486
SRR8749031	Uninduced	1.851
SRR8749032	Uninduced	2.246

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.551
SRR8400027	Control - Root	3.322