Gene detail information of Glyur000594s00025962 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18372.1 | 1.00E-38 | Small nuclear ribonucleoprotein family protein |
| NR | XP_003593896.1 | 4.24E-61 | Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] |
| trEMBL | tr|G7IP64|G7IP64_MEDTR | 2.00E-61 | Uncharacterized protein {ECO:0000313|EMBL:AFK45944.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00594 | 21825 | 22163 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000594s00025962.1 | PF01423.17 | LSM | 28 | 86 | 5.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.289 |
| SRR1783600 | control | 28.999 |
| SRR1783602 | moderate drought stress | 40.738 |
| SRR1811619 | moderate drought stress | 41.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.462 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.018 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.219 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.258 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.733 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.661 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.334 |
| SRR2868004 | Drought Stress (root) | 40.043 |
| SRR2967015 | Control (root) | 38.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.237 |
| SRR9715740 | Leaf | 46.419 |
| SRR9715741 | Leaf | 50.535 |
| SRR9715739 | Root | 28.694 |
| SRR9715742 | Root | 38.074 |
| SRR9715743 | Root | 34.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.953 |
| SRR8749028 | MeJA induced 9h | 38.362 |
| SRR8749029 | MeJA induced 9h | 44.543 |
| SRR8749030 | Uninduced | 54.385 |
| SRR8749031 | Uninduced | 37.826 |
| SRR8749032 | Uninduced | 37.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.456 |
| SRR8400027 | Control - Root | 52.209 |