Gene detail information of Glyur000594s00025961 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18370.1 | 1.00E-99 | DEGP protease 5 |
| NR | AFK39628.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_001532883.1 | 5.00E-56 | protease [Dinoroseobacter shibae DFL 12 = DSM 16493] |
| Swissprot | tr|Q9SEL7|DEGP5_ARATH | 2.00E-123 | Protease Do-like 5, chloroplastic (Precursor) |
| trEMBL | tr|I3SH86|I3SH86_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK39628.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00594 | 16612 | 20626 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000594s00025961.1 | PF13365.1 | Trypsin_2 | 127 | 276 | 1.90E-19 |
| Glyur000594s00025961.2 | PF13365.1 | Trypsin_2 | 146 | 255 | 5.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.257 |
| SRR1783600 | control | 1.247 |
| SRR1783602 | moderate drought stress | 1.166 |
| SRR1811619 | moderate drought stress | 1.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.703 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.526 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.816 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.849 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.467 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.475 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.280 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.297 |
| SRR2868004 | Drought Stress (root) | 4.567 |
| SRR2967015 | Control (root) | 6.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.930 |
| SRR9715740 | Leaf | 29.630 |
| SRR9715741 | Leaf | 7.564 |
| SRR9715739 | Root | 1.921 |
| SRR9715742 | Root | 1.357 |
| SRR9715743 | Root | 1.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.733 |
| SRR8749028 | MeJA induced 9h | 5.409 |
| SRR8749029 | MeJA induced 9h | 4.096 |
| SRR8749030 | Uninduced | 2.153 |
| SRR8749031 | Uninduced | 0.438 |
| SRR8749032 | Uninduced | 1.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.863 |
| SRR8400027 | Control - Root | 4.872 |