Gene detail information of Glyur000593s00016432


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G11964.10RNA binding;RNA binding
NRKHN00023.10Protein RRP5 like [Glycine soja]
COGYP_001876871.15.00E-1430S ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
trEMBLtr|A0A072VUK4|A0A072VUK4_MEDTR0Pre-rRNA processing protein Rrp5 {ECO:0000313|EMBL:KEH41780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0059394910118349+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0006396  RNA processing

GO:0006397  mRNA processing


cellular_component

GO:0005622  intracellular

GO:0005634  nucleus


molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000593s00016432.1PF00575.18S14815442.50E-09
Glyur000593s00016432.1PF00575.18S1137714502.70E-17
Glyur000593s00016432.1PF05843.9Suf177318683.40E-08
Glyur000593s00016432.2PF00575.18S14815442.60E-09
Glyur000593s00016432.2PF00575.18S1132613950.00013
Glyur000593s00016432.2PF00575.18S1141314872.70E-19
Glyur000593s00016432.2PF05843.9Suf181019053.50E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.445
SRR1783600control5.464
SRR1783602moderate drought stress8.913
SRR1811619moderate drought stress8.821

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.304
DRR006520Root Summer glycyrrhizin high producing strain7.161
DRR006521Root Winter glycyrrhizin high producing strain5.588
DRR006522Root Winter glycyrrhizin high producing strain5.427
DRR006523Root Summer glycyrrhizin low producing strain8.570
DRR006524Root Summer glycyrrhizin low producing strain8.446
DRR006525Leaf Summer glycyrrhizin high producing strain1.869
DRR006526Leaf Summer glycyrrhizin high producing strain1.862

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)11.456
SRR2868004Drought Stress (root)8.702
SRR2967015Control (root)8.317

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf1.769
SRR9715740Leaf3.516
SRR9715741Leaf2.006
SRR9715739Root0.844
SRR9715742Root11.719
SRR9715743Root9.207

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.245
SRR8749028MeJA induced 9h12.424
SRR8749029MeJA induced 9h9.510
SRR8749030Uninduced0.773
SRR8749031Uninduced0.681
SRR8749032Uninduced1.295

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root14.261
SRR8400027Control - Root12.860

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved