Gene detail information of Glyur000593s00016430 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06610.1 | 5.00E-101 | Protein of unknown function (DUF620) |
| NR | XP_003519015.2 | 1.94E-176 | PREDICTED: uncharacterized protein LOC100801654 [Glycine max] |
| trEMBL | tr|K7K8X0|K7K8X0_SOYBN | 7.00E-177 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G26680.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00593 | 66372 | 69745 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000593s00016430.1 | PF04788.7 | DUF620 | 98 | 179 | 2.20E-26 |
| Glyur000593s00016430.1 | PF04788.7 | DUF620 | 179 | 320 | 8.60E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.439 |
| SRR1783600 | control | 1.251 |
| SRR1783602 | moderate drought stress | 1.415 |
| SRR1811619 | moderate drought stress | 1.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.562 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.069 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.057 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.648 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.586 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.875 |
| SRR2868004 | Drought Stress (root) | 2.264 |
| SRR2967015 | Control (root) | 3.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.101 |
| SRR9715740 | Leaf | 1.215 |
| SRR9715741 | Leaf | 1.898 |
| SRR9715739 | Root | 0.208 |
| SRR9715742 | Root | 4.429 |
| SRR9715743 | Root | 3.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.492 |
| SRR8400027 | Control - Root | 3.762 |